View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_87 (Length: 237)
Name: NF19379_low_87
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_87 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46983005 - 46982769
Alignment:
| Q |
1 |
caatatatgttcatgtaatatcacaaacgacaactttatgtatcagcaaagttgaaaataatcttagtggtgcaatcataaagaagatgacattaatatt |
100 |
Q |
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| T |
46983005 |
caatgtatgttcatgtaatatcacaaacgacaactttatgtatcagcaaagttgaaaataatcttagtggtgcaatcataaagaagatgacattaatatt |
46982906 |
T |
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| Q |
101 |
tcagaaaagtttaaattcagcttactggtgcagtcatagaaaagatgtaaacagcaaaacactatattttagattgtatcatcaaaatgtggcatatgaa |
200 |
Q |
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| T |
46982905 |
tcagaaaagtttaaattcagcttactggtgcagtcatagaaaagatgtaaacagcaaaacactatattttagattgtatcatcaaaatgtggcatatgaa |
46982806 |
T |
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| Q |
201 |
tggacgggggaccacaaatacctaattaataatgcct |
237 |
Q |
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| T |
46982805 |
tggacgggggaccacaaatacctaattaataatgcct |
46982769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 46983091 - 46983023
Alignment:
| Q |
51 |
gttgaaaataatcttagtggtgcaatcataaagaagatgacattaatatttcagaaaagtttaaattca |
119 |
Q |
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| T |
46983091 |
gttgaaattaatcttggtggtatagtcattaaaaagatgtcattaatatttcataaaagtttaatttca |
46983023 |
T |
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