View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_89 (Length: 231)
Name: NF19379_low_89
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 26414208 - 26414002
Alignment:
| Q |
18 |
atatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccaccggtgactaatttaacccatatcgcgctttaggcagatcccagaca |
117 |
Q |
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| T |
26414208 |
atatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccaccggtgactaatttaacctatatcgcgctttaggcagatcccagaca |
26414109 |
T |
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| Q |
118 |
atccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctgaannnnnnncttgatgcttctctctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26414108 |
atccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctgaatttttttcttgatgcttctctctg |
26414009 |
T |
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| Q |
218 |
ctcctcc |
224 |
Q |
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|||||| |
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| T |
26414008 |
ttcctcc |
26414002 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 1536743 - 1536650
Alignment:
| Q |
99 |
tttaggcagatcccagacaatccgaatctgctgc-tatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctg |
191 |
Q |
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||||||| ||||||| |||| ||||| ||||| |||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
1536743 |
tttaggcggatcccaatcaattcgaataggctgcctatgtctgtagctaattatggaacctgccgcctgtgccatataataatcctcaagtctg |
1536650 |
T |
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