View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_low_9 (Length: 555)
Name: NF19379_low_9
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 328021 - 328547
Alignment:
| Q |
13 |
aatatatctcgtgaagcacaaacaatggtactagtggaccaccctaacgtgctaaaatcacactgttcattcgtgagtgatcacaatctatgggttgtga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
328021 |
aatatatctcgtgaagcacaaacaatggtactagtggaccaccctaacgtgctaaaatcacactgctcattcgtgagtgatcacaatctatgggttgtga |
328120 |
T |
|
| Q |
113 |
tgccattcatgtcgggtggttcatgtcttcacatattgaaagctgcacatcctgatgggtttgaagaggttgttattgcaactgtgctcagggaggtatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
328121 |
tgccattcatgtcgggtggttcatgtcttcacatattgaaagctgcacatcctgatggatttgaagaggttgttattgcaactgtgctcagggaggtatt |
328220 |
T |
|
| Q |
213 |
gaagggtttagagtatcttcatcatcatggtcacattcaccgtgacgttaaggcgggtaatgttctcatcgattctcgcggtgcggttaagctcggtgat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
328221 |
gaagggtttagagtatcttcatcatcatggtcacattcaccgtgacgttaaggcgggtaatgttctcattgattctcgcggtgcggttaagctcggtgat |
328320 |
T |
|
| Q |
313 |
ttcggtgtatctgcttgtttgtttgattccggtgatcggcaacggtcgagaaatacttttgttggtacaccttgttggatggcccctgaagtcatggagc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
328321 |
ttcggtgtatctgcttgtttgtttgattccggtgatcggcaaaggtcgagaaatacttttgttggcacaccttgttggatggcccctgaagtcatggagc |
328420 |
T |
|
| Q |
413 |
aattgcatggttataacttcaagtattgtgttctttctattcttttaatttcttttatcatataataaaatgcttaatatatacactatttaaaatggtt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
328421 |
aattgcatggttataacttcaagtattgtgttctttctattcttttaatttcttttatcatataataaaatacttaatatatacactatttaaaatggtt |
328520 |
T |
|
| Q |
513 |
tgccaccccaaattgtaacggtggttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
328521 |
tgccaccccaaattgtaacggtggttt |
328547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University