View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_90 (Length: 227)
Name: NF19379_low_90
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_90 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 363258 - 363038
Alignment:
| Q |
7 |
gtatggctcgccagaacaaatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaatccaatgcctaagtctcatgatcatgatccccat |
106 |
Q |
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| T |
363258 |
gtatggctcgccagaataaatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaattcaatgcctaagtctcatgatcatgatccccat |
363159 |
T |
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| Q |
107 |
cattaccgacggaattattccggatcatcttcctccatgtctccaaatattgctgatggactctaaagtggctggaatgttgagaaaatgtatgattagt |
206 |
Q |
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| T |
363158 |
cgttaccgtcggaattattccggatcatcttcctccatgtctccaaatattgctgatggcctctaaagtggctggaatgttgagaaaaggtatgattagt |
363059 |
T |
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| Q |
207 |
ttatatgttatgattttaaat |
227 |
Q |
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||||||||||||||||||||| |
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| T |
363058 |
ttatatgttatgattttaaat |
363038 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 41023984 - 41024094
Alignment:
| Q |
7 |
gtatggctcgccagaacaaatcaagttaaaatttctaagtctcgaccaggtaaaagtacaggagaatccaatgcctaagtctcatgatcatgatccccat |
106 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||| ||||| | |
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| T |
41023984 |
gtatggctcgccataacaaatcaagttaaaatttataagtctcgaccatgtaaaagtagaggagaatccaatgtctgagtctcatgatcatgttcccctt |
41024083 |
T |
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| Q |
107 |
cattaccgacg |
117 |
Q |
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| T |
41024084 |
cgttaccgacg |
41024094 |
T |
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