View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937_high_1 (Length: 586)

Name: NF1937_high_1
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937_high_1
NF1937_high_1
[»] chr2 (27 HSPs)
chr2 (10-435)||(10460365-10460785)
chr2 (443-568)||(10459872-10460002)
chr2 (95-285)||(10470270-10470459)
chr2 (92-303)||(10515231-10515441)
chr2 (95-307)||(10486353-10486561)
chr2 (119-286)||(10542380-10542544)
chr2 (116-297)||(10504871-10505054)
chr2 (108-259)||(10490893-10491040)
chr2 (448-547)||(7463785-7463884)
chr2 (93-303)||(10858024-10858227)
chr2 (91-307)||(27965107-27965319)
chr2 (441-568)||(10503864-10503989)
chr2 (453-568)||(10514668-10514782)
chr2 (92-307)||(9077795-9078006)
chr2 (131-307)||(28106881-28107053)
chr2 (472-568)||(10485802-10485898)
chr2 (99-259)||(7483622-7483770)
chr2 (198-307)||(9083142-9083251)
chr2 (442-568)||(10541535-10541656)
chr2 (370-426)||(7463371-7463427)
chr2 (252-307)||(10504451-10504506)
chr2 (531-568)||(9083526-9083563)
chr2 (471-518)||(10469861-10469908)
chr2 (369-427)||(10504743-10504801)
chr2 (530-568)||(10541787-10541825)
chr2 (178-239)||(10846604-10846664)
chr2 (483-556)||(10893679-10893752)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 10460785 - 10460365
Alignment:
Q  10 ataatactattgtagattctgtaaattttgccagtagctctataaattagtcttgataaacaaatcccccaatctttgctattatgcaccacatgatagc 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10460785 ataatactattgtagattctgtaaattctgccagtagctctataaattagtcttgataaacaaatcccccaatctttgctattatgcaccacataatagc 10460686  T
Q  110 aaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggctatttttaacagcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10460685 aaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaaaaatattatttggctatttttaacagcaa 10460586  T
Q  210 acacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgttaaatcttatttcaaann 309  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||      
T  10460585 acacttctggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaac-----catgttgttaaatcttatttcaaatt 10460491  T
Q  310 nnnnnngttttgtcttatacacactctacctctggtcattattataagcnnnnnnnntttgcttcaaatttgggtcaatattgtaagtaaaatttcacaa 409  Q
          |||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  10460490 ttttttgttttgtcttatacacactctacctctggtcattataataagcaaaaaaaatttgcttcaaatttgggtcaatattgtaagtaaaatttcacaa 10460391  T
Q  410 cttttacactatttaatgttgttatt 435  Q
    |||||||||||||||||| |||||||    
T  10460390 cttttacactatttaatgctgttatt 10460365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 443 - 568
Target Start/End: Complemental strand, 10460002 - 10459872
Alignment:
Q  443 aagaagatgtgatggaatgtcatatca-----gtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggat 537  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10460002 aagaagatgtgatggaatgtcatatcatatcagtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggat 10459903  T
Q  538 tgatttaattcgccttctaccaagagatatt 568  Q
    |||||||||||||||||||||||||||||||    
T  10459902 tgatttaattcgccttctaccaagagatatt 10459872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 10470459 - 10470270
Alignment:
Q  95 gcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggc 194  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| | |||| |||||||||||||||||    
T  10470459 gcaccacataatagcaaagaccacactgttccaacaaatcttgataaacatggtggtgttgtgctattttttaacatgctaaaaaagaatattatttggc 10470360  T
Q  195 tatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttaca 285  Q
    || |||||||||   |||||||||||  |||||||||| || ||||| |||||||| ||| |||||||| |||||||||||||||||||||    
T  10470359 ta-ttttaacagggtacacttgtggcgctggctttcactttaaagagaaagtatgatctactaacatatctaaggtaccgtaacctttaca 10470270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 92 - 303
Target Start/End: Complemental strand, 10515441 - 10515231
Alignment:
Q  92 tatgcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaac-ctactaataaagaatattatt 190  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||| |  || |||| |||||||||||||    
T  10515441 tatgcatcacataatagcaaagaccacactgttccaccaaaacttgataaacatggtgttgttatgttatttttttatactgctaaaaaagaatattatt 10515342  T
Q  191 tggctatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttg 290  Q
     ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||   |||||||||| ||||||||||||||||||| |||| |    
T  10515341 -ggctatttt-aacaggatacacttgtggcattggctttcacattgaagaggaagtacgatgcaataacatatttaaggtaccgtaacctttatatgtgg 10515244  T
Q  291 ttaaatcttattt 303  Q
    ||||||| |||||    
T  10515243 ttaaatcctattt 10515231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 10486561 - 10486353
Alignment:
Q  95 gcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggc 194  Q
    ||||| ||| ||||||||||||||||||||| || || |||||||||||||||||||   ||||||||||||||| |||||| |||||||||||| ||||    
T  10486561 gcacctcataatagcaaagaccacactgttcaactaactcttgataaacatggtgtt---gtgctattttttaacatactaaaaaagaatattatctggc 10486465  T
Q  195 tatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgttaa 294  Q
    |||||| ||||| | |||||||||||||||||||||||| | | ||| ||||||||  ||||||| ||| |||||||| || |||||| |||||  ||||    
T  10486464 tatttt-aacaggatacacttgtggcattggctttcacactaaggagaaagtatgatgtaataacttatctaaggtacggtgacctttgcatgtgattaa 10486366  T
Q  295 atcttatttcaaa 307  Q
    ||| |||||||||    
T  10486365 atcctatttcaaa 10486353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 10542544 - 10542380
Alignment:
Q  119 actgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggctatttttaacagcaaacacttgtg 218  Q
    |||||||||| || ||||||||||||||||  | || ||||||||||||| ||||||| |||||| |||||||||||||||| ||||||| |||||||||    
T  10542544 actgttccacaaagtcttgataaacatggt--tattatgctattttttaatctactaaaaaagaacattatttggctatttt-aacagcatacacttgtg 10542448  T
Q  219 gcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacat 286  Q
    | ||||||||| ||||||||||| |||||||  |||||||||||| |||||||| |||||||||||||    
T  10542447 gtattggcttttacattgaagagaaagtatggtctaataacatatctaaggtactgtaacctttacat 10542380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 10505054 - 10504871
Alignment:
Q  116 cacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaata---ttatttggctatttttaacagcaaaca 212  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||| || |||||||||  |||| | ||   ||||||||| ||||| ||||| | |||    
T  10505054 cacactgttccaccaaatcttgataaacatgatgttgtggtgctatattctaacctactggtaaaaactaatgttatttggcgatttt-aacaggataca 10504956  T
Q  213 cttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgttaaatc 297  Q
    ||||||||||||||||||||||||||||| ||||||||  | ||||||||| |||||||| || |||||||||||| ||||||||    
T  10504955 cttgtggcattggctttcacattgaagagaaagtatgatgtcataacatatctaaggtacagtgacctttacatgtggttaaatc 10504871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 10491040 - 10490893
Alignment:
Q  108 gcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggctatttttaacagc 207  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||   |||||||||||||| |||||   ||||||||||||||||||| |||||||||     
T  10491040 gcaaggactacactgttccaccaactcttgataaacatggtgtt---gtgctattttttaatctactgtaaaagaatattatttggcta-ttttaacagg 10490945  T
Q  208 aaacacttgtggcattggctttcacattgaagaggaagtatgacctaataac 259  Q
    | ||||||||||||||| |||||||| | | ||| ||||||||  |||||||    
T  10490944 atacacttgtggcattgactttcacactaaggagaaagtatgatgtaataac 10490893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 448 - 547
Target Start/End: Original strand, 7463785 - 7463884
Alignment:
Q  448 gatgtgatggaatgtcatatcagtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattgatttaatt 547  Q
    ||||||||||||| ||| ||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  7463785 gatgtgatggaatatcacatcagcttaaagatctatgaacttttataggtttgatctacttaacgagaattttcaactcaacagttgggttgatttaatt 7463884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 303
Target Start/End: Complemental strand, 10858227 - 10858024
Alignment:
Q  93 atgcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttg 192  Q
    ||||||||||  ||| ||||| || ||||||||||| |||||||||||||||||||  | || |||| | |||||| |||||||    |||||||||| |    
T  10858227 atgcaccacaacataacaaaggccgcactgttccacaaaatcttgataaacatggt--tgttatgctgtcttttaatctactaa----gaatattattgg 10858134  T
Q  193 gctatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgtt 292  Q
    |||||||| ||||| | | ||||||||||||||||||||||||||||  || |  ||  | |||||||||| ||||||||| ||||||||| |||| |||    
T  10858133 gctatttt-aacaggatatacttgtggcattggctttcacattgaaggagagggttggtcaaataacatatctaaggtaccttaacctttaaatgtggtt 10858035  T
Q  293 aaatcttattt 303  Q
    ||||| |||||    
T  10858034 aaatcctattt 10858024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 307
Target Start/End: Complemental strand, 27965319 - 27965107
Alignment:
Q  91 ttatgcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatt 190  Q
    ||||||||||||  |||||||| ||  || |||||| |  ||||||||||||||||||  | || |||||| |||||| ||||||| |||||||||||||    
T  27965319 ttatgcaccacaatatagcaaatactgcagtgttccgcataatcttgataaacatggt--tgttatgctatcttttaatctactaa-aaagaatattatt 27965223  T
Q  191 tggctatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttg 290  Q
     ||||||||| ||||||| || |||||||||||| || ||||| |||||||| ||||||  | | |||||||| ||||||||| |  |||||| || | |    
T  27965222 gggctatttt-aacagcatacccttgtggcattgtctatcacaatgaagagggagtatggtcaagtaacatatctaaggtaccctggcctttaaatatgg 27965124  T
Q  291 ttaaatcttatttcaaa 307  Q
    |||||||||| ||||||    
T  27965123 ttaaatcttacttcaaa 27965107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 441 - 568
Target Start/End: Complemental strand, 10503989 - 10503864
Alignment:
Q  441 gtaagaagatgtgatggaatgtcatatcagtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattga 540  Q
    |||||| ||||||||||||| ||||||||| |||||||||| |||| ||| ||||||||||||||||||| ||||||||||||  | || |  || ||||    
T  10503989 gtaagatgatgtgatggaatatcatatcagcttaaagatctatgaacttttataggtttgatctacttaatgagaattttcaa--ctacgggagggttga 10503892  T
Q  541 tttaattcgccttctaccaagagatatt 568  Q
    ||||||||||||||||| || |||||||    
T  10503891 tttaattcgccttctacaaaaagatatt 10503864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 453 - 568
Target Start/End: Complemental strand, 10514782 - 10514668
Alignment:
Q  453 gatggaatgtcatatcagtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattgatttaattcgcct 552  Q
    |||||||| ||||||| |||||||||| | |||||||| ||| |||||||||||| ||| | || ||||||| |||  |||||||||||||||||| |||    
T  10514782 gatggaatatcatatcggtttaaagatatatgaatttt-atatgtttgatctactgaacaaaaaatttcaattcaaaggttggattgatttaattcacct 10514684  T
Q  553 tctaccaagagatatt 568  Q
     |||| ||||||||||    
T  10514683 cctacaaagagatatt 10514668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 9077795 - 9078006
Alignment:
Q  92 tatgcaccacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattattt 191  Q
    |||||||| ||  |||||||||||  ||||||||||   |||||||||||| |||||  || ||   |||||||||| ||||||| |||||||| | ||     
T  9077795 tatgcacctcagaatagcaaagactgcactgttccatagaatcttgataaatatggttgttatgctatattttttaatctactaacaaagaatactgttg 9077894  T
Q  192 ggctatttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgt 291  Q
    ||||||||| |||||||    ||||||||||||||||||| ||||||   ||||  ||  |  | ||||||| |||||||||  ||||||||||||| ||    
T  9077895 ggctatttt-aacagcatcaccttgtggcattggctttcaaattgaa---gaagcgtggtcgtaaaacatatctaaggtaccacaacctttacatgtggt 9077990  T
Q  292 taaatcttatttcaaa 307  Q
    |||||| |||||||||    
T  9077991 taaatcctatttcaaa 9078006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 307
Target Start/End: Original strand, 28106881 - 28107053
Alignment:
Q  131 aatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggctatttttaacagcaaacacttgtggcattggctttc 230  Q
    ||||||||||||||||||  | || |||||| |||| | ||||||| ||||||||||||| ||||||||| ||||| | || |||||||||||| || ||    
T  28106881 aatcttgataaacatggt--tcttatgctatcttttgatctactaa-aaagaatattattgggctatttt-aacagtatacccttgtggcattgtctatc 28106976  T
Q  231 acattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgttaaatcttatttcaaa 307  Q
    ||| |||||||| ||||||  | | |||||||| ||||||||| |  |||| | || | ||||||||||| ||||||    
T  28106977 acaatgaagagggagtatggtcaagtaacatatctaaggtaccctggccttcaaatatggttaaatcttacttcaaa 28107053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 472 - 568
Target Start/End: Complemental strand, 10485898 - 10485802
Alignment:
Q  472 ttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattgatttaattcgccttctaccaagagatatt 568  Q
    |||||||||| |||||||| |||||||| || ||||| | ||||||||||||| | || |||  |||||||||||| ||||||||| ||||||||||    
T  10485898 ttaaagatctatgaatttttataggtttaatgtacttcatgagaattttcaattccacggttttattgatttaattagccttctacaaagagatatt 10485802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 259
Target Start/End: Original strand, 7483622 - 7483770
Alignment:
Q  99 cacatgatagcaaagaccacactgttccaccaaatcttgataaacatggtgtttttgtgctattttttaacctactaataaagaatattatttggctatt 198  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||      |||||||||| |||||||     | ||| |||||||||| |||| |    
T  7483622 cacataatagcaaagaccacactattccaccaactcttgatagacatg------ttgtgctattctttaacc-----aaaaacaatattattttgcta-t 7483709  T
Q  199 tttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataac 259  Q
    |||||||| | ||||||||||||||| |||||||| | | ||| ||||||||  |||||||    
T  7483710 tttaacaggatacacttgtggcattgactttcacactaaggagaaagtatgatgtaataac 7483770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 9083142 - 9083251
Alignment:
Q  198 ttttaacagcaaacacttgtggcattggctttcacattgaagaggaagtatgacctaataacatatataaggtaccgtaacctttacatgttgttaaatc 297  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| | |   ||  |  || |||||| |||||||||| ||||||||||||  ||||||||    
T  9083142 ttttaccagcacacacttgtggcatcggctttcacattgaagaagtatagtggtcatatgacatatctaaggtaccgcaacctttacatgcggttaaatc 9083241  T
Q  298 ttatttcaaa 307  Q
     |||||||||    
T  9083242 ctatttcaaa 9083251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 568
Target Start/End: Complemental strand, 10541656 - 10541535
Alignment:
Q  442 taagaagatgtgatggaatgtcatatcagtttaaagatctttgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattgat 541  Q
    ||||| || |||||||||| | |||||| |||||||||||  || |||| ||||||||||| |||||||| |||| |||||||    | ||||||||| |    
T  10541656 taagatgacgtgatggaatattatatcattttaaagatct--gagtttttataggtttgatatacttaacaagaactttcaat---tcggttggattggt 10541562  T
Q  542 ttaattcgccttctaccaagagatatt 568  Q
    |||||||||||| ||| ||| ||||||    
T  10541561 ttaattcgccttttacaaagtgatatt 10541535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 7463371 - 7463427
Alignment:
Q  370 gcttcaaatttgggtcaatattgtaagtaaaatttcacaacttttacactatttaat 426  Q
    ||||||||||| ||||||| || |||||||||||| || ||||||||||||||||||    
T  7463371 gcttcaaattttggtcaatgttataagtaaaatttaactacttttacactatttaat 7463427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 10504506 - 10504451
Alignment:
Q  252 ctaataacatatataaggtaccgtaacctttacatgttgttaaatcttatttcaaa 307  Q
    |||||||||||| ||||||||| | |||||||||||| |||||||| |||||||||    
T  10504506 ctaataacatatctaaggtaccatgacctttacatgtggttaaatcctatttcaaa 10504451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 568
Target Start/End: Original strand, 9083526 - 9083563
Alignment:
Q  531 gttggattgatttaattcgccttctaccaagagatatt 568  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9083526 gttggattgatttaattcgccttctacaaagagatatt 9083563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 10469908 - 10469861
Alignment:
Q  471 tttaaagatctttgaattttcataggtttgatctacttaacgagaatt 518  Q
    ||||||||||| |||||||| |||||||  ||||||||||||||||||    
T  10469908 tttaaagatctatgaatttttataggttatatctacttaacgagaatt 10469861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 10504801 - 10504743
Alignment:
Q  369 tgcttcaaatttgggtcaatattgtaagtaaaatttcacaacttttacactatttaatg 427  Q
    ||||| |||||  ||||| | |||||||||||||||||| ||| |||||||||||||||    
T  10504801 tgcttgaaattgtggtcattgttgtaagtaaaatttcactactgttacactatttaatg 10504743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 568
Target Start/End: Original strand, 10541787 - 10541825
Alignment:
Q  530 agttggattgatttaattcgccttctaccaagagatatt 568  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  10541787 agttggattgatttaattcgccttctacaaagagttatt 10541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 10846664 - 10846604
Alignment:
Q  178 aaagaatattatttggctatttttaacagcaaacacttgtggcattggctttcacattgaag 239  Q
    ||||| ||||||| ||||||||| ||||||  || |||||||||| ||||||||||||||||    
T  10846664 aaagagtattattgggctatttt-aacagcgtacgcttgtggcatcggctttcacattgaag 10846604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 10893679 - 10893752
Alignment:
Q  483 tgaattttcataggtttgatctacttaacgagaattttcaatccaacagttggattgatttaattcgccttcta 556  Q
    |||||||| |||||||  ||| |||||| | |||||||||||||| | |||||||| ||||| || ||||||||    
T  10893679 tgaatttttataggttcaatccacttaatgtgaattttcaatccagcggttggattaatttagtttgccttcta 10893752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University