View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_high_10 (Length: 240)
Name: NF1937_high_10
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_high_10 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 32877624 - 32877400
Alignment:
| Q |
20 |
taccgatgttaacaaccccagccgttacaaggccctttcttttctttttgttcgtggcattccgcttcacccaagaacggt----ttcctacattactgc |
115 |
Q |
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| T |
32877624 |
taccgatgttaacatccccagccgttacaaggccctttcttttatttttgttcgtggcattccgcttcacccaagaatggtcgatttcttgcattactgc |
32877525 |
T |
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| Q |
116 |
actagtttctttgcacatatgcacagttgcattttcttagttggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttg |
215 |
Q |
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| T |
32877524 |
actagtttgtttgcacatatgcacaattgcattttcttagttgtcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttg |
32877425 |
T |
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| Q |
216 |
gcagatcttttggctttgcctcatt |
240 |
Q |
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| T |
32877424 |
gcagatcttttggctttgccccatt |
32877400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 32880063 - 32880253
Alignment:
| Q |
40 |
gccgttacaaggccctttcttttctttttgttcgtggcattccgcttcacccaagaacggt----ttcctacattactgcactagtttctttgcacatat |
135 |
Q |
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| T |
32880063 |
gccgttgcaaggccctttcttttatttttgttcctagcattccgcttcaccctagaacgatcgatttactgcattactgcacaaatgtctttgcacatat |
32880162 |
T |
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| Q |
136 |
gcacagttgcattttcttagttggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggcagatctttt |
226 |
Q |
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| T |
32880163 |
tcagagttgcattttctctattggaggaactttcatatcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggaagatatttt |
32880253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 31760391 - 31760512
Alignment:
| Q |
111 |
actgcactagtttctttgcacatatgcacagttgc------attttcttagttggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaattta |
204 |
Q |
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||||||||||||||||||||||||| |||| |||| ||||||| ||||| || ||||||||||| |||||||||||||||||| ||| | | |
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| T |
31760391 |
actgcactagtttctttgcacatatacacaattgcaattgcattttctctattggcagaactttcatctctttctcgtgtgtcaaaatttacagaaataa |
31760490 |
T |
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| Q |
205 |
tacaagtgttggcagatctttt |
226 |
Q |
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| T |
31760491 |
tacaattgttggaagatatttt |
31760512 |
T |
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