View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937_high_11 (Length: 237)

Name: NF1937_high_11
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937_high_11
NF1937_high_11
[»] chr6 (1 HSPs)
chr6 (105-224)||(1775203-1775322)
[»] chr3 (2 HSPs)
chr3 (10-111)||(37557372-37557473)
chr3 (10-111)||(37561710-37561811)
[»] chr2 (1 HSPs)
chr2 (10-107)||(21469724-21469822)
[»] chr8 (1 HSPs)
chr8 (27-111)||(30741593-30741678)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 1775322 - 1775203
Alignment:
Q  105 gccattctcaacactcaatgatgcaaagactaaaaaatttctaaacgtgaagcttcatttatcagtttgaatatttataagacaaccttttaaattagca 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  1775322 gccattctcaacactcaatgatgcaaaaactaaaaaatttctaaacgtgaagcttcattcatcagtttgaatatttataagacagccctttaaattagca 1775223  T
Q  205 aagattttcgtcactttcta 224  Q
    ||||||||||||||||||||    
T  1775222 aagattttcgtcactttcta 1775203  T

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Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 37557473 - 37557372
Alignment:
Q  10 agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37557473 agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat 37557374  T
Q  110 tc 111  Q
    ||    
T  37557373 tc 37557372  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 37561811 - 37561710
Alignment:
Q  10 agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561811 agaacctgtgtttaagcgtttggaaactgatagtaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat 37561712  T
Q  110 tc 111  Q
    ||    
T  37561711 tc 37561710  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21469724 - 21469822
Alignment:
Q  10 agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactca-attttattaattgcaatgttggcttaaatagcc 107  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  21469724 agaacctgtatttaagtgtttggaaactgatagcaaagaacacaacaattggactgaatgactcagtttttattgattgcaatgttggcttaaatagcc 21469822  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 30741593 - 30741678
Alignment:
Q  27 gtttggaaactgatagcaaagaacacaacaattggactaaatgactca-attttattaattgcaatgttggcttaaatagccattc 111  Q
    ||||||||||| | ||||||||||||||||||| |||||||| |||||  ||||||||||||||| ||||||||||||| ||||||    
T  30741593 gtttggaaactcaaagcaaagaacacaacaattagactaaattactcagtttttattaattgcaacgttggcttaaataaccattc 30741678  T

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