View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1937_high_3 (Length: 450)
Name: NF1937_high_3
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 32898980 - 32898548
Alignment:
| Q |
1 |
caccgggaaaaggctgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaacaccgac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898980 |
caccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaacaccgac |
32898881 |
T |
|
| Q |
101 |
attcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
32898880 |
attcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagttgttgtgaaca |
32898781 |
T |
|
| Q |
201 |
gagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898780 |
gagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccac |
32898681 |
T |
|
| Q |
301 |
cgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcat |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898680 |
cgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcat |
32898581 |
T |
|
| Q |
401 |
gctgttgttactggctgagtttgaggctatttt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32898580 |
gctgttgttactggctgagtttgaggctatttt |
32898548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 17415196 - 17414889
Alignment:
| Q |
114 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
213 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
214 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
314 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
413 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttg |
17414909 |
T |
|
| Q |
414 |
gctgagtttgaggctatttt |
433 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17414908 |
gctgagtttgaggctatttt |
17414889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 46312720 - 46312413
Alignment:
| Q |
114 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
213 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
214 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
314 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
413 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacaaagactcatgctgttgttgttg |
46312433 |
T |
|
| Q |
414 |
gctgagtttgaggctatttt |
433 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46312432 |
gctgagtttgaggctatttt |
46312413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 114 - 433
Target Start/End: Original strand, 20409621 - 20409928
Alignment:
| Q |
114 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
213 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
214 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
314 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
413 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttg |
20409908 |
T |
|
| Q |
414 |
gctgagtttgaggctatttt |
433 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20409909 |
gctgagtttgaggctatttt |
20409928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 40169283 - 40168985
Alignment:
| Q |
114 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
213 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
40169184 |
T |
|
| Q |
214 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
40169183 |
atgttgt---------ggagaaacaggacacgtgctcctttagatcggtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
314 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
413 |
Q |
| |
|
| ||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| ||||||| || |
|
|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgttgttgttgttg |
40169005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
136 |
cattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaa |
235 |
Q |
| |
|
||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
236 |
acaggac |
242 |
Q |
| |
|
| ||||| |
|
|
| T |
46483087 |
ataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 46482880 - 46482960
Alignment:
| Q |
15 |
tgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaaca |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaaca |
46482960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University