View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_low_11 (Length: 237)
Name: NF1937_low_11
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 1775322 - 1775203
Alignment:
| Q |
105 |
gccattctcaacactcaatgatgcaaagactaaaaaatttctaaacgtgaagcttcatttatcagtttgaatatttataagacaaccttttaaattagca |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
1775322 |
gccattctcaacactcaatgatgcaaaaactaaaaaatttctaaacgtgaagcttcattcatcagtttgaatatttataagacagccctttaaattagca |
1775223 |
T |
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| Q |
205 |
aagattttcgtcactttcta |
224 |
Q |
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|||||||||||||||||||| |
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| T |
1775222 |
aagattttcgtcactttcta |
1775203 |
T |
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Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 37557473 - 37557372
Alignment:
| Q |
10 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557473 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
37557374 |
T |
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| Q |
110 |
tc |
111 |
Q |
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|| |
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| T |
37557373 |
tc |
37557372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 37561811 - 37561710
Alignment:
| Q |
10 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561811 |
agaacctgtgtttaagcgtttggaaactgatagtaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
37561712 |
T |
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| Q |
110 |
tc |
111 |
Q |
| |
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|| |
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| T |
37561711 |
tc |
37561710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21469724 - 21469822
Alignment:
| Q |
10 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactca-attttattaattgcaatgttggcttaaatagcc |
107 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
21469724 |
agaacctgtatttaagtgtttggaaactgatagcaaagaacacaacaattggactgaatgactcagtttttattgattgcaatgttggcttaaatagcc |
21469822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 30741593 - 30741678
Alignment:
| Q |
27 |
gtttggaaactgatagcaaagaacacaacaattggactaaatgactca-attttattaattgcaatgttggcttaaatagccattc |
111 |
Q |
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||||||||||| | ||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
30741593 |
gtttggaaactcaaagcaaagaacacaacaattagactaaattactcagtttttattaattgcaacgttggcttaaataaccattc |
30741678 |
T |
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