View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_low_12 (Length: 233)
Name: NF1937_low_12
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 52758253 - 52758468
Alignment:
| Q |
2 |
gtggtttttgtgaataccatgtgactctgattcaagaggatcatccacgttgtagatcaaagagtaggattgacttttatgcctctgaggaatgaaggta |
101 |
Q |
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| T |
52758253 |
gtggtttttgtgaataccatgtgactttgattcaagaggatcatccacgttgtagatcaaagagtaggattgacttttatgcctctgaggaatgaaggta |
52758352 |
T |
|
| Q |
102 |
ataaaagttagaatcggggtttaatgacaacaaataagaacaaatttaaaataatagcttagagtatacttcttgatgttgtttcttcaagagaaagggc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52758353 |
ataaaagttagaatcggggtttaatgacaacaaataagaacaaatttaaaataatagcttagagtatacttcttgatgttgtttcttcaagagaaagggc |
52758452 |
T |
|
| Q |
202 |
tttggtaataacatcc |
217 |
Q |
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|||||||||||||||| |
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| T |
52758453 |
tttggtaataacatcc |
52758468 |
T |
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