View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937_low_4 (Length: 445)

Name: NF1937_low_4
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937_low_4
NF1937_low_4
[»] chr3 (49 HSPs)
chr3 (21-204)||(37557199-37557382)
chr3 (21-204)||(37561537-37561720)
chr3 (233-346)||(26165543-26165663)
chr3 (233-297)||(55026759-55026823)
chr3 (237-296)||(46123947-46124006)
chr3 (233-346)||(30418418-30418538)
chr3 (233-301)||(20139376-20139445)
chr3 (233-301)||(6048685-6048753)
chr3 (233-301)||(17466531-17466599)
chr3 (233-301)||(25790764-25790832)
chr3 (233-301)||(36178693-36178761)
chr3 (233-288)||(50415819-50415874)
chr3 (235-301)||(47144189-47144255)
chr3 (233-301)||(5845129-5845197)
chr3 (233-301)||(29701698-29701766)
chr3 (233-301)||(41183290-41183358)
chr3 (233-301)||(52000051-52000119)
chr3 (233-288)||(11908048-11908103)
chr3 (236-346)||(51999229-51999346)
chr3 (235-301)||(32120429-32120495)
chr3 (235-301)||(42560917-42560983)
chr3 (235-301)||(44084325-44084391)
chr3 (235-297)||(51304358-51304420)
chr3 (240-301)||(43473906-43473967)
chr3 (233-301)||(6832400-6832468)
chr3 (233-301)||(38572143-38572211)
chr3 (233-326)||(12974652-12974753)
chr3 (233-288)||(27847438-27847493)
chr3 (233-288)||(50734045-50734100)
chr3 (233-288)||(50778755-50778810)
chr3 (235-301)||(4045996-4046062)
chr3 (246-287)||(28155230-28155271)
chr3 (234-301)||(138991-139059)
chr3 (234-301)||(10426421-10426488)
chr3 (233-288)||(48886975-48887030)
chr3 (233-295)||(49357486-49357548)
chr3 (243-301)||(25832724-25832781)
chr3 (247-288)||(37183840-37183881)
chr3 (233-301)||(41890550-41890618)
chr3 (233-301)||(42601494-42601562)
chr3 (233-301)||(42601777-42601845)
chr3 (233-301)||(49823159-49823227)
chr3 (233-301)||(51427116-51427184)
chr3 (242-301)||(49147287-49147345)
chr3 (233-301)||(33935007-33935075)
chr3 (244-288)||(35853193-35853236)
chr3 (233-288)||(37410408-37410463)
chr3 (244-288)||(43022677-43022720)
chr3 (244-288)||(49710390-49710433)
[»] chr2 (30 HSPs)
chr2 (21-180)||(21469816-21469978)
chr2 (234-301)||(17485833-17485900)
chr2 (235-301)||(24997096-24997162)
chr2 (233-297)||(1073073-1073137)
chr2 (233-301)||(4296761-4296829)
chr2 (233-301)||(12855035-12855103)
chr2 (233-301)||(22351604-22351672)
chr2 (233-301)||(30822573-30822641)
chr2 (233-301)||(43021757-43021825)
chr2 (233-284)||(9117845-9117896)
chr2 (233-301)||(8852073-8852141)
chr2 (233-301)||(17929245-17929313)
chr2 (233-301)||(36209464-36209532)
chr2 (235-297)||(44280012-44280074)
chr2 (245-301)||(7763489-7763545)
chr2 (234-337)||(39490116-39490226)
chr2 (233-288)||(1308687-1308742)
chr2 (233-301)||(7588492-7588562)
chr2 (233-288)||(14382996-14383051)
chr2 (243-287)||(6362983-6363027)
chr2 (234-301)||(36526837-36526904)
chr2 (233-301)||(9074214-9074282)
chr2 (233-301)||(37245517-37245585)
chr2 (234-301)||(1987135-1987202)
chr2 (243-301)||(14152067-14152125)
chr2 (244-301)||(927893-927949)
chr2 (243-288)||(5146711-5146756)
chr2 (233-301)||(13151473-13151542)
chr2 (233-288)||(31192973-31193028)
chr2 (233-288)||(38901749-38901804)
[»] chr6 (22 HSPs)
chr6 (349-433)||(1775121-1775205)
chr6 (233-301)||(631532-631600)
chr6 (233-301)||(8660573-8660641)
chr6 (233-301)||(34838595-34838663)
chr6 (233-296)||(8669909-8669972)
chr6 (234-301)||(12501846-12501913)
chr6 (234-297)||(12512931-12512994)
chr6 (234-288)||(10883899-10883953)
chr6 (234-288)||(30446271-30446325)
chr6 (235-284)||(26654327-26654376)
chr6 (235-284)||(26760297-26760346)
chr6 (233-301)||(34328295-34328363)
chr6 (233-300)||(8218960-8219027)
chr6 (233-297)||(24933271-24933337)
chr6 (234-301)||(197818-197885)
chr6 (233-285)||(2503257-2503307)
chr6 (233-301)||(17961253-17961321)
chr6 (233-301)||(24348447-24348515)
chr6 (235-301)||(32359760-32359826)
chr6 (233-301)||(6380478-6380546)
chr6 (244-301)||(29428519-29428575)
chr6 (244-288)||(6725626-6725669)
[»] chr4 (40 HSPs)
chr4 (233-346)||(45081401-45081521)
chr4 (235-346)||(13094381-13094499)
chr4 (235-346)||(35809126-35809244)
chr4 (234-288)||(48403890-48403944)
chr4 (235-345)||(4981473-4981590)
chr4 (233-287)||(52017373-52017427)
chr4 (235-296)||(34464014-34464075)
chr4 (233-301)||(2215271-2215339)
chr4 (233-301)||(3533296-3533364)
chr4 (233-301)||(6290615-6290683)
chr4 (233-301)||(8991798-8991866)
chr4 (233-301)||(33604672-33604740)
chr4 (233-301)||(38173570-38173638)
chr4 (233-301)||(40721050-40721118)
chr4 (233-301)||(46917500-46917568)
chr4 (233-297)||(48506595-48506659)
chr4 (234-301)||(34199259-34199326)
chr4 (234-287)||(23540416-23540469)
chr4 (233-301)||(3618442-3618510)
chr4 (233-301)||(23389918-23389986)
chr4 (233-301)||(55560468-55560536)
chr4 (235-301)||(19272798-19272864)
chr4 (236-301)||(31336346-31336411)
chr4 (233-301)||(13110576-13110644)
chr4 (233-301)||(16020862-16020930)
chr4 (233-301)||(28899347-28899415)
chr4 (235-297)||(16175006-16175068)
chr4 (235-301)||(27863730-27863796)
chr4 (233-285)||(27142319-27142369)
chr4 (233-296)||(17329901-17329965)
chr4 (234-301)||(33523285-33523353)
chr4 (234-297)||(53348050-53348114)
chr4 (233-288)||(33077863-33077917)
chr4 (234-301)||(56054032-56054098)
chr4 (233-301)||(18469356-18469425)
chr4 (233-301)||(53184085-53184153)
chr4 (235-288)||(52772781-52772834)
chr4 (245-301)||(12158153-12158208)
chr4 (233-288)||(31848763-31848818)
chr4 (244-288)||(55408570-55408613)
[»] chr8 (27 HSPs)
chr8 (21-174)||(30741668-30741824)
chr8 (235-346)||(40283437-40283555)
chr8 (234-346)||(43524381-43524500)
chr8 (233-346)||(1958169-1958289)
chr8 (233-346)||(13947328-13947448)
chr8 (235-301)||(26244511-26244577)
chr8 (234-287)||(35099463-35099516)
chr8 (233-301)||(1634830-1634898)
chr8 (233-297)||(12272471-12272535)
chr8 (233-301)||(42859939-42860007)
chr8 (233-301)||(45101014-45101082)
chr8 (233-288)||(43525078-43525133)
chr8 (233-296)||(44149889-44149952)
chr8 (235-344)||(29731659-29731774)
chr8 (233-282)||(23549746-23549795)
chr8 (233-301)||(43618338-43618406)
chr8 (233-286)||(15053661-15053714)
chr8 (235-288)||(35931889-35931942)
chr8 (243-301)||(31129502-31129560)
chr8 (233-287)||(5735315-5735369)
chr8 (233-301)||(18029488-18029556)
chr8 (233-301)||(34955655-34955723)
chr8 (234-301)||(5212305-5212372)
chr8 (233-301)||(44503181-44503249)
chr8 (233-287)||(36912445-36912499)
chr8 (233-301)||(41477197-41477265)
chr8 (233-284)||(26632142-26632193)
[»] scaffold0016 (1 HSPs)
scaffold0016 (235-346)||(66063-66181)
[»] chr5 (32 HSPs)
chr5 (233-326)||(23089500-23089600)
chr5 (234-346)||(3454698-3454816)
chr5 (233-344)||(29619003-29619121)
chr5 (233-346)||(25670895-25671015)
chr5 (235-346)||(13479815-13479934)
chr5 (233-301)||(19241330-19241398)
chr5 (233-301)||(31013833-31013901)
chr5 (233-346)||(32976565-32976685)
chr5 (233-301)||(31008374-31008442)
chr5 (235-346)||(40888856-40888974)
chr5 (233-288)||(27942518-27942573)
chr5 (233-301)||(42806989-42807057)
chr5 (233-288)||(30648102-30648157)
chr5 (235-301)||(39238428-39238494)
chr5 (233-326)||(4219434-4219530)
chr5 (233-301)||(7651017-7651085)
chr5 (233-288)||(36572409-36572464)
chr5 (235-285)||(42317918-42317968)
chr5 (233-301)||(25652827-25652895)
chr5 (234-301)||(27407032-27407100)
chr5 (233-281)||(39008514-39008562)
chr5 (242-301)||(41153005-41153063)
chr5 (234-287)||(4938213-4938267)
chr5 (233-301)||(4577019-4577087)
chr5 (233-301)||(8176292-8176360)
chr5 (242-297)||(34709895-34709950)
chr5 (239-297)||(32363610-32363668)
chr5 (233-301)||(14278843-14278911)
chr5 (243-288)||(25032380-25032424)
chr5 (233-285)||(23649157-23649209)
chr5 (233-285)||(23809362-23809414)
chr5 (233-288)||(41263389-41263444)
[»] chr7 (27 HSPs)
chr7 (233-301)||(35029098-35029166)
chr7 (235-346)||(45549610-45549728)
chr7 (233-346)||(36518478-36518598)
chr7 (233-301)||(40302480-40302548)
chr7 (233-288)||(39769757-39769812)
chr7 (235-301)||(30566615-30566681)
chr7 (233-301)||(5813113-5813181)
chr7 (233-301)||(47159484-47159552)
chr7 (235-284)||(33508517-33508566)
chr7 (233-301)||(32130260-32130328)
chr7 (233-301)||(42881373-42881441)
chr7 (233-288)||(20354251-20354306)
chr7 (233-288)||(30720148-30720203)
chr7 (234-301)||(32748812-32748879)
chr7 (233-346)||(26812076-26812196)
chr7 (235-288)||(38351607-38351660)
chr7 (235-282)||(33078776-33078823)
chr7 (233-277)||(37951788-37951832)
chr7 (233-288)||(22191248-22191303)
chr7 (233-288)||(22656695-22656750)
chr7 (233-290)||(25038582-25038639)
chr7 (235-301)||(37887862-37887928)
chr7 (233-301)||(114505-114573)
chr7 (233-301)||(22737584-22737652)
chr7 (233-288)||(21654874-21654929)
chr7 (244-288)||(43571095-43571138)
chr7 (233-288)||(48984935-48984990)
[»] chr1 (35 HSPs)
chr1 (233-346)||(51494461-51494581)
chr1 (234-301)||(48404342-48404409)
chr1 (233-301)||(31159399-31159467)
chr1 (233-301)||(36230369-36230437)
chr1 (234-301)||(37822581-37822649)
chr1 (233-301)||(45239150-45239218)
chr1 (233-301)||(45456140-45456208)
chr1 (233-301)||(48388097-48388165)
chr1 (234-301)||(37646550-37646617)
chr1 (235-301)||(19578901-19578967)
chr1 (235-301)||(31468145-31468211)
chr1 (234-346)||(23092729-23092848)
chr1 (233-301)||(2478317-2478385)
chr1 (233-301)||(27630449-27630517)
chr1 (240-288)||(35847117-35847165)
chr1 (233-301)||(37420333-37420401)
chr1 (233-346)||(51156877-51156997)
chr1 (235-285)||(14096719-14096769)
chr1 (233-301)||(8464111-8464179)
chr1 (235-288)||(30878535-30878588)
chr1 (233-301)||(37691279-37691347)
chr1 (234-301)||(29523715-29523782)
chr1 (234-301)||(33164424-33164491)
chr1 (233-288)||(45623519-45623574)
chr1 (233-301)||(17783389-17783457)
chr1 (233-301)||(44334301-44334369)
chr1 (233-301)||(44929279-44929347)
chr1 (234-301)||(47300487-47300554)
chr1 (239-301)||(8468336-8468398)
chr1 (233-285)||(29919398-29919451)
chr1 (233-301)||(44451259-44451327)
chr1 (233-301)||(44651085-44651153)
chr1 (233-297)||(51520233-51520298)
chr1 (233-284)||(52933757-52933808)
chr1 (233-284)||(52941392-52941443)
[»] scaffold0054 (1 HSPs)
scaffold0054 (233-301)||(57732-57800)
[»] scaffold0362 (1 HSPs)
scaffold0362 (237-346)||(5316-5432)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 37557382 - 37557199
Alignment:
Q  21 aatagccattcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37557382 aatagccattcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaa 37557283  T
Q  121 tacaaattaatttcttaaagaccaagtcctctcctataaactaggattttattctaacagaaaaatactactttaactctttca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37557282 tacaaattaatttcttaaagaccaagtcctctcctataaactaggattttattctaacagacaaatactactttaactctttca 37557199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 37561720 - 37561537
Alignment:
Q  21 aatagccattcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561720 aatagccattcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaa 37561621  T
Q  121 tacaaattaatttcttaaagaccaagtcctctcctataaactaggattttattctaacagaaaaatactactttaactctttca 204  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37561620 tacaaattaatttcttaaagaccaagtcctatcctataaactaggattttattctaacagacaaatactactttaactctttca 37561537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 26165543 - 26165663
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||       |||| ||||||| |||||||||||    
T  26165543 ccattggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaaa 26165642  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||||||||||||||||||    
T  26165643 tattttcccattgtacatggt 26165663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 55026823 - 55026759
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  55026823 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgaagtgaagtgttga 55026759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 46124006 - 46123947
Alignment:
Q  237 tggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  46124006 tggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtagaatgttg 46123947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 30418418 - 30418538
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||      
T  30418418 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatg 30418517  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||| |||||||| |||||    
T  30418518 tattttaccattgtaaatggt 30418538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 20139445 - 20139376
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  20139445 ccattggagaaggtaaaagttgaatgagtgttgaattaagagagagaaaatgatgtgaagtgttgagaat 20139376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 6048685 - 6048753
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  6048685 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 6048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 17466599 - 17466531
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  17466599 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 17466531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 25790764 - 25790832
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  25790764 ccattggagaggtaaaaattgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaat 25790832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 36178693 - 36178761
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||| ||||    
T  36178693 ccattggagaggtaaaaattgaatggatgttgaattatgagagagaaaatgatttgaagtgttgggaat 36178761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 50415819 - 50415874
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  50415819 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 50415874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 47144255 - 47144189
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||| ||||    
T  47144255 attggagaggtaaaaattgaataagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 47144189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 5845129 - 5845197
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||||    
T  5845129 ccattggagatgtaaaaattgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaat 5845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 29701766 - 29701698
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  29701766 ccattggaggggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 29701698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 41183358 - 41183290
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  41183358 ccattggagaggtaaaaattgtatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 41183290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 52000051 - 52000119
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| | ||||| ||||    
T  52000051 ccattggagatgtaaaaattgaataaatgttgaattatgagagagaaaatgatgtggagtgttgggaat 52000119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 11908103 - 11908048
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11908103 ccattgaagaggtaaaaattgaatgggtgttgaattatgagagaaaaaatgatgtg 11908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 51999229 - 51999346
Alignment:
Q  236 ttggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaatat 328  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | | ||||| ||||    
T  51999229 ttggagagataaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaatatat 51999328  T
Q  329 tttcccattgtacatggt 346  Q
    ||| |||||||| |||||    
T  51999329 tttgccattgtaaatggt 51999346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 32120429 - 32120495
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||||| | ||||| ||||    
T  32120429 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 32120495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 42560983 - 42560917
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| ||||||||||| | ||||||||||| |||||||||||||||||| ||||||| ||||    
T  42560983 attggagagttaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggaatgttgggaat 42560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 44084391 - 44084325
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||||| | ||||| ||||    
T  44084391 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 44084325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 51304420 - 51304358
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||    
T  51304420 attggagaggtaaaaattgaatgggtgttgaattatgatagagaaaatgacgtggagtgttga 51304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 43473967 - 43473906
Alignment:
Q  240 agaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||| ||||    
T  43473967 agaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatctggaatgttgggaat 43473906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 6832468 - 6832400
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| |||||||||||||||||||||||||  ||| ||||||||||||| | ||||| ||||    
T  6832468 ccattggagagataaaaattgaatgagtgttgaattaaaagaaagaaaatgatgtggagtgttgggaat 6832400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 38572143 - 38572211
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||   |||||||||| |||||||||||| ||||| | ||||||||||    
T  38572143 ccattggagaggtaaaaattgaatagatgttgaattaagagagagaaaataatgtggagtgttgagaat 38572211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 12974753 - 12974652
Alignment:
Q  233 ccattggagaggtaaaaat-tgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaa 324  Q
    ||||||||||||||||||  |||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| ||||||||||    
T  12974753 ccattggagaggtaaaaaaatgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaa 12974654  T
Q  325 at 326  Q
    ||    
T  12974653 at 12974652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 27847493 - 27847438
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27847493 ccattgaagaggtaaaaattaaatgggtgttgaattaagagagagaaaatgatgtg 27847438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 50734100 - 50734045
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  50734100 ccattggagaggtaaaaattgaataggtattgaattaagagagagaaaatgatgtg 50734045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 50778755 - 50778810
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  50778755 ccattggagaggtaaaaattgaataggtattgaattaagagagagaaaatgatgtg 50778810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 4046062 - 4045996
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||| || | ||||||||||| |||||||||||||||||| | ||||| ||||    
T  4046062 attggagaggtaaaaattaaaagggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 4045996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 28155230 - 28155271
Alignment:
Q  246 aaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28155230 aaaaattgaatgagtgttgaattatgagagagaaaattatgt 28155271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 139059 - 138991
Alignment:
Q  234 cattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||| | ||||| ||||    
T  139059 cattggagagggtaaaagttgaatgagtgttgaattaagagagacaaaatgatgtggagtgttgggaat 138991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 10426421 - 10426488
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||| || || |||||  ||||||||||||||||| | ||||| ||||    
T  10426421 cattggagaggtaaaaattgaatgggtattaaattaaaagagagaaaatgatgtggagtgttgggaat 10426488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 48886975 - 48887030
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||||  |||| ||||| |||||||||||| |||||    
T  48886975 ccattggagaggtaaaaattgaatggatgttaaattaagagagagaaaataatgtg 48887030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 49357486 - 49357548
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgtt 295  Q
    |||||||||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||||    
T  49357486 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatatgaaatgtt 49357548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 25832724 - 25832781
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||| ||||| ||||    
T  25832724 ggtaaaagttgaatgagtgttgaataa-gagagagaaaatgatgtgaagtgttgggaat 25832781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 37183840 - 37183881
Alignment:
Q  247 aaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  37183840 aaaattgaatgggtgttgaattaagagagagaaaatgatgtg 37183881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 41890618 - 41890550
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  41890618 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 41890550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 42601494 - 42601562
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  42601494 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 42601562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 42601845 - 42601777
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  42601845 ccattggagaaggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 42601777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 49823159 - 49823227
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  49823159 ccattggagatggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 49823227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 51427184 - 51427116
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  51427184 ccattggagatggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 51427116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 49147287 - 49147345
Alignment:
Q  242 aggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  49147287 aggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 49147345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 33935075 - 33935007
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||| |||||||||||| | |||||||||||||||||| | ||||| ||||    
T  33935075 ccattggagagggtaaaagttgattgagtgttgaataa-gagagagaaaatgatgtggagtgttgggaat 33935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 35853193 - 35853236
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  35853193 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 35853236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 37410408 - 37410463
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||| |||||||| |||||||| | ||||||||||||||||||    
T  37410408 ccattggagagggtaaaagttgaatgaatgttgaataa-gagagagaaaatgatgtg 37410463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 43022720 - 43022677
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  43022720 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 43022677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 49710390 - 49710433
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  49710390 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 49710433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 21469816 - 21469978
Alignment:
Q  21 aatagccattcaacacacgataaaaaacacaactgaaagcaacccacttagctag---aataaaggctagtggtgagtggcaactgaaacaaattaaaac 117  Q
    ||||||| || |||||| ||| ||||  ||||| ||||||||||||||||||||    |||||||||||||||||||| | |||||||||||||||||||    
T  21469816 aatagccttttaacacatgatgaaaacaacaaccgaaagcaacccacttagctactaaaataaaggctagtggtgagtagtaactgaaacaaattaaaac 21469915  T
Q  118 aaatacaaattaatttcttaaagaccaagtcctctcctataaactaggattttattctaacag 180  Q
    ||||| ||||||| ||| ||||||| ||||| ||||||||||||||| |||||||||||||||    
T  21469916 aaataaaaattaaattcataaagactaagtcttctcctataaactagaattttattctaacag 21469978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 17485900 - 17485833
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  17485900 cattagagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaat 17485833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 24997162 - 24997096
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  24997162 attggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 24997096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 1073073 - 1073137
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||    
T  1073073 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgaagtggagtgttga 1073137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 4296761 - 4296829
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| ||||    
T  4296761 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaataatgtggagtgttgggaat 4296829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 12855103 - 12855035
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  12855103 ccattggagaggtaaaaattgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaat 12855035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 22351604 - 22351672
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  22351604 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 22351672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 30822573 - 30822641
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  30822573 ccattggagaggtaaaaattgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaat 30822641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 43021825 - 43021757
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  43021825 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 43021757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 9117896 - 9117845
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9117896 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatga 9117845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8852141 - 8852073
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  8852141 ccattggagagataaaaattaaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 8852073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 17929245 - 17929313
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  17929245 ccattggagatgtaaaaattgaatgggtgttaaattatgagagagaaaatgatgtggagtgttgggaat 17929313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 36209464 - 36209532
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||| |||||| ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||    
T  36209464 ccataggagagataaaaattgaatgagtgttgaattaagaaagagaaaatgatgtggagtgttgagaat 36209532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 44280074 - 44280012
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||||| | ||||||    
T  44280074 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggagtgttga 44280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 7763489 - 7763545
Alignment:
Q  245 taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||    
T  7763489 taaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaat 7763545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 39490226 - 39490116
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaat 326  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||| || | ||||| ||||       |||||||||||| |||||||||| |    
T  39490226 cattggagagataaaaattgaatgagtgttgaattaagagagagagaatgatttggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaatt 39490127  T
Q  327 attttcccatt 337  Q
     |||| |||||    
T  39490126 tttttaccatt 39490116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 1308687 - 1308742
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||    
T  1308687 ccattggagaagtaaaaattaaatgtgtgttggattatgagagagaaaatgatgtg 1308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 7588492 - 7588562
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaatta--tgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| |||||||||||   |||||||||||||||||| | ||||| ||||    
T  7588492 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagagaaaatgatgtggagtgttgggaat 7588562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 14383051 - 14382996
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  14383051 ccattggagaggtaaaaattgaaaaggtgttgaattaagagagagaaaatgatgtg 14382996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 6363027 - 6362983
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  6363027 ggtaaaagttgaatgagtgttgaattaagagagagaaaatgatgt 6362983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 36526904 - 36526837
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||| |||| ||||| ||||| |||||||||||| ||||| | ||||| ||||    
T  36526904 cattggagaggtaaaaattaaatgggtgttaaattaagagagagaaaataatgtggagtgttgggaat 36526837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 9074214 - 9074282
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  9074214 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 9074282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 37245585 - 37245517
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  37245585 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 37245517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 1987202 - 1987135
Alignment:
Q  234 cattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| ||||| |||||||||||||||| || |||| ||||||||||||| | ||||||||||    
T  1987202 cattggagagggtaaaagttgaatgagtgttgaa-taagagatagaaaatgatgtggagtgttgagaat 1987135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 14152067 - 14152125
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||| ||||||| |||||||||||  ||||||||||||||||| | ||||| ||||    
T  14152067 ggtaaaagttgaatgggtgttgaattaaaagagagaaaatgatgtggagtgttgggaat 14152125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 927893 - 927949
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  927893 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 927949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 5146711 - 5146756
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||| || |||||||||||||| | ||||||||||||||||||    
T  5146711 ggtaaaagttaaatgagtgttgaataaagagagagaaaatgatgtg 5146756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 13151473 - 13151542
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| ||||||||||||||||||| |||| | ||||| ||||| | ||||| ||||    
T  13151473 ccattggagagggtaaaagttgaatgagtgttgaattaagagaaaaaaaattatgtgcagtgttgggaat 13151542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 31192973 - 31193028
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||| |||||||||| |||||| | ||||||||||||||||||    
T  31192973 ccattggagagggtaaaagttgaatgagtattgaataa-gagagagaaaatgatgtg 31193028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 38901804 - 38901749
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||||    
T  38901804 ccattggagagggtaaaagttgaacgagtgttgaataa-gagagagaaaatgatgtg 38901749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 1775121 - 1775205
Alignment:
Q  349 agttaccttctggctcactgtttcttgtactttactttttacttatagttatctttctctttggtagatttttggtactacatag 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1775121 agttaccttctggctcactgtttcttgtactttactttttacttatagttaactttctctttggtagatttttggtactacatag 1775205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 631600 - 631532
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  631600 ccattggagaggtaaaaattgaatgagtgttgaatgaagagagagaaaatgatgtggagtgttgggaat 631532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8660641 - 8660573
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  8660641 ccattggagaggtaaaaattgaatgtgtgttgaattaagagagagaaaatgatgtggagtgttgggaat 8660573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 34838663 - 34838595
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  34838663 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 34838595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 8669972 - 8669909
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttg 296  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  8669972 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaataatgtgaagtgttg 8669909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 12501913 - 12501846
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||    
T  12501913 cattagagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggattgttgagaat 12501846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 12512994 - 12512931
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||    
T  12512994 cattggagaggtaaaaattgaatgggtgttgaattaagagagaaaaaatgatgtggaatgttga 12512931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 10883953 - 10883899
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  10883953 cattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 10883899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 30446325 - 30446271
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  30446325 cattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 30446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 26654327 - 26654376
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26654327 attggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatga 26654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 26760297 - 26760346
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26760297 attggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatga 26760346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 34328363 - 34328295
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||||    
T  34328363 ccattggagatgtaaaaattgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaat 34328295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 8219027 - 8218960
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaa 300  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||| | |||||||||    
T  8219027 ccattggagaggtaaaagttgaatgggtgttgaattaagagagagaaaataatgtggagtgttgagaa 8218960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 24933271 - 24933337
Alignment:
Q  233 ccattggagaggtaaaaat--tgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| | ||||||    
T  24933271 ccattggagaggtaaaaatattgaatgagtgttgaattatgagagagaaaataatgtggagtgttga 24933337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 197885 - 197818
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| | ||||| ||||    
T  197885 cattggagatgtaaaaattgaatgggtgttgaattaagagagagaaaatgacgtggagtgttgggaat 197818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 2503307 - 2503257
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  2503307 ccattggagaggtaaaaattgaatgggtgttgaatta--agagagaaaatgat 2503257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 17961253 - 17961321
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||| |||  |||||||||| |||||||||||| ||||| | ||||| ||||    
T  17961253 ccattggagaggtaaaaattgtatgtttgttgaattaagagagagaaaattatgtggagtgttgggaat 17961321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 24348515 - 24348447
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||| ||||||||||||||||||  ||||||||||  ||||||||||||||||| | ||||| ||||    
T  24348515 ccattgaagaggtaaaaattgaatggatgttgaattaaaagagagaaaatgatgtggagtgttgggaat 24348447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 32359826 - 32359760
Alignment:
Q  235 attggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| ||||||||||||||| | |||||||||||||||||| ||||||| ||||    
T  32359826 attggagagggtaaaaatggaatgagtgttgaataa-gagagagaaaatgatgtggaatgttgggaat 32359760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 6380478 - 6380546
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| ||||||| ||||||||| | |||||||||||||||||| | ||||| ||||    
T  6380478 ccattggagagggtaaaagttgaatgtgtgttgaataa-gagagagaaaatgatgtggagtgttgggaat 6380546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 29428519 - 29428575
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  29428519 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 29428575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 6725626 - 6725669
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  6725626 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 6725669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 45081401 - 45081521
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||       |||||||||||| |||||||||||    
T  45081401 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 45081500  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||||||||||||||||||    
T  45081501 tattttcccattgtacatggt 45081521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 13094381 - 13094499
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||        ||||||||||| ||||||||||||     
T  13094381 attggagagataaaaattgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaaatt 13094480  T
Q  328 ttttcccattgtacatggt 346  Q
    |||||||||||||||||||    
T  13094481 ttttcccattgtacatggt 13094499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 35809244 - 35809126
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||       |||| ||||||| |||||||||| |     
T  35809244 attggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatgatgtggaatgttgggaattgaaaaagtggatgttgaagggtattgaaattt 35809145  T
Q  328 ttttcccattgtacatggt 346  Q
    |||| | ||||||||||||    
T  35809144 tttttctattgtacatggt 35809126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 48403890 - 48403944
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48403890 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 48403944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 4981590 - 4981473
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||| |     
T  4981590 attggagaggtaaaaattaaataggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggatattgaaattt 4981491  T
Q  328 ttttcccattgtacatgg 345  Q
    ||||||||||||||||||    
T  4981490 ttttcccattgtacatgg 4981473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 52017427 - 52017373
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52017427 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgt 52017373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 34464014 - 34464075
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttg 296  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  34464014 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtgaaatgttg 34464075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 2215271 - 2215339
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| ||||    
T  2215271 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaattatgtggagtgttgggaat 2215339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 3533296 - 3533364
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  3533296 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 3533364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 6290683 - 6290615
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  6290683 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 6290615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8991866 - 8991798
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  8991866 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 8991798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 33604740 - 33604672
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||    
T  33604740 ccattggagaggtaaaaattgaatgagtgttgaattaagatagagaaaatgatgtggagtgttgggaat 33604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 38173638 - 38173570
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  38173638 ccattggagaggtaaaaattggatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 38173570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 40721118 - 40721050
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  40721118 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 40721050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 46917500 - 46917568
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  46917500 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 46917568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 48506595 - 48506659
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  48506595 ccattggagagttaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttga 48506659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 34199259 - 34199326
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  34199259 cattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 34199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 23540416 - 23540469
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  23540416 cattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgt 23540469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 3618442 - 3618510
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| | ||||| ||||    
T  3618442 ccattggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 3618510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 23389918 - 23389986
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| | ||||| ||||    
T  23389918 ccattggagaggtaacaattgaatgagtattgaattatgagagagaaaataatgtggagtgttgggaat 23389986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 55560468 - 55560536
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| | ||||| ||||    
T  55560468 ccattggagaggtaaaaattgaataggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 55560536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 19272864 - 19272798
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||    
T  19272864 attggagagataaaaattgaatggatgttgaattatgagagagaaaatgatgtggagtgttgggaat 19272798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 31336346 - 31336411
Alignment:
Q  236 ttggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||| ||| | ||||||||||    
T  31336346 ttggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgacgtggagtgttgagaat 31336411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 13110644 - 13110576
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| | ||||| ||||    
T  13110644 ccattggagaggtaaaaattgaatgggtgttgaattaagagagaaaaaatgttgtggagtgttgggaat 13110576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 16020930 - 16020862
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||| ||||| | ||||| ||||    
T  16020930 ccattggagaggtaaaaattgaatggatgttgaattaagagagagaaaataatgtggagtgttgggaat 16020862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 28899415 - 28899347
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||| ||| ||||    
T  28899415 ccattagagaggtaaaaattgaatgggtgttgaattaagagagagaaaacgatgtggaatattgggaat 28899347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 16175006 - 16175068
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| | ||||||    
T  16175006 attggagaggtaaaaattgaaagggtgttgaattaagagtgagaaaatgatgtggagtgttga 16175068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 27863796 - 27863730
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||  ||||||||||| | ||||||||||| ||| | ||||||||||    
T  27863796 attggagaggtaaaaattgaatggatgttgaattataacagagaaaatgacgtggagtgttgagaat 27863730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 27142319 - 27142369
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  27142319 ccattggagaggtaaaaattgaatgggtgttgaatta--agagagaaaatgat 27142369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 17329901 - 17329965
Alignment:
Q  233 ccattggagaggtaaaa-attgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttg 296  Q
    ||||||| ||||||||| |||||||   ||||||||||||||||||||||||||||| |||||||    
T  17329901 ccattggggaggtaaaaaattgaatagatgttgaattatgagagagaaaatgatgtggaatgttg 17329965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 33523353 - 33523285
Alignment:
Q  234 cattggagaggtaaaaa-ttgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||| |||||||  |||||||||| |||||||||||||||||| ||||||| ||||    
T  33523353 cattggagagataaaaaattgaatggatgttgaattaagagagagaaaatgatgtggaatgttgggaat 33523285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 53348050 - 53348114
Alignment:
Q  234 cattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||| ||||| || ||||| |||||||| | |||||||||||||||||||||||||||    
T  53348050 cattggagagggtaaaagttaaatgactgttgaataaagagagagaaaatgatgtgaaatgttga 53348114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 33077863 - 33077917
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||    
T  33077863 ccattggagaggtaaaaattgaatgggtgttaaatta-aagagagaaaatgatgtg 33077917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 56054098 - 56054032
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| |||||||||||| |||| |||||| |||||||||||||||||| | ||||| ||||    
T  56054098 cattggagagg-aaaaattgaatgggtgtagaattaagagagagaaaatgatgtggagtgttgggaat 56054032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 18469356 - 18469425
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagag-agaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||  |||||||||| ||||| | ||||||||||| | ||||| ||||    
T  18469356 ccattggagaggtaaaaattgaatggatgttgaattaagagagaaaaaaatgatgtggagtgttgggaat 18469425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 53184085 - 53184153
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| | ||| ||||||||||||||||| | |||||||||||||||||||| ||||| ||||    
T  53184085 ccattggagagggttaaagttgaatgagtgttgaataa-gagagagaaaatgatgtgaagtgttgggaat 53184153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 52772834 - 52772781
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||| ||||||||||| | |||||||||||  ||||||||||| |||||    
T  52772834 attggagagataaaaattgaaagggtgttgaattaaaagagagaaaataatgtg 52772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 12158208 - 12158153
Alignment:
Q  245 taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||| ||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  12158208 taaaagttgaatgagtgttgaataa-gagagagaaaatgatgtggagtgttgggaat 12158153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 31848763 - 31848818
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||  ||||||||||||||||| | ||||||||||||||||||    
T  31848763 ccattggagagggtaaatgttgaatgagtgttgaataa-gagagagaaaatgatgtg 31848818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 55408570 - 55408613
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  55408570 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 55408613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 30741668 - 30741824
Alignment:
Q  21 aatagccattcaacacacgataaaaaacac-aactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactg-aaacaaattaaaa-c 117  Q
    |||| |||||||||||||||| |||||||  ||| ||| |||||||| ||||||| |||||| ||||||||||||| | ||| | ||||||||||||| |    
T  30741668 aataaccattcaacacacgatgaaaaacaataacagaatgcaacccagttagctaaaataaaagctagtggtgagtagtaacaggaaacaaattaaaaac 30741767  T
Q  118 aaatacaaattaatttcttaaagaccaagtcctctcctataaactaggattttattc 174  Q
    ||||||||||||||||| |||||||||| || | |||||||||||||||| ||||||    
T  30741768 aaatacaaattaatttcctaaagaccaaatcttttcctataaactaggatgttattc 30741824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 40283555 - 40283437
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||       |||| |||||||||||||||||| |     
T  40283555 attggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaaggtattgaaattt 40283456  T
Q  328 ttttcccattgtacatggt 346  Q
    |||| ||||||||||||||    
T  40283455 tttttccattgtacatggt 40283437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 43524381 - 43524500
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||       |||| ||||||| |||||||||| |    
T  43524381 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaatt 43524480  T
Q  327 attttcccattgtacatggt 346  Q
     |||  ||||||||||||||    
T  43524481 ttttaaccattgtacatggt 43524500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 1958169 - 1958289
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||      
T  1958169 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatg 1958268  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||| |||||||| |||||    
T  1958269 tattttaccattgtaaatggt 1958289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 13947448 - 13947328
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||| ||||       || ||||||||| ||||||||||     
T  13947448 ccattggagaggtaaaaattgaatgggtgttgaattatgagaaagaaaatgatgtggagtgttgggaattgaaaaagtaggtgttgaagggtattgaaat 13947349  T
Q  326 tattttcccattgtacatggt 346  Q
    | |||| ||||||| ||||||    
T  13947348 ttttttaccattgttcatggt 13947328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 26244577 - 26244511
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||    
T  26244577 attggagaggtaaaaattgaatgtgtgttgaattatgagagagaaaatgatgtggagtgttgggaat 26244511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 35099516 - 35099463
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35099516 cattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgt 35099463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 1634830 - 1634898
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  1634830 ccattagagaggtaaaaactgaatgggtgttgaattatgagagagaaaatgatgtggagtgttgagaat 1634898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 12272471 - 12272535
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||    
T  12272471 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgaagtggagtgttga 12272535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 42860007 - 42859939
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  42860007 ccattggagatgtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 42859939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 45101014 - 45101082
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  45101014 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 45101082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 43525078 - 43525133
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  43525078 ccattggagaggtaaaaattgaatgagtgttgaattaaaagagagaaaatgatgtg 43525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 44149952 - 44149889
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttg 296  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||||    
T  44149952 ccattggagaggtaaaaattgaatgggtattgaattatgaaagagaaaatgatgtggaatgttg 44149889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 344
Target Start/End: Complemental strand, 29731774 - 29731659
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||| | ||||| ||||       |||||||||||| |||||||||| |     
T  29731774 attggagagttaaaaattgaatgggtgttgaattatgagaga-aaaatgacgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaattt 29731676  T
Q  328 ttttcccattgtacatg 344  Q
    |||||||||||||||||    
T  29731675 ttttcccattgtacatg 29731659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 23549795 - 23549746
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaat 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23549795 ccattggagaggtaaaaattgaatgggtgttgaattatgagagagaaaat 23549746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 43618338 - 43618406
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||||||||| | ||||| ||||    
T  43618338 ccattggagaggtaaaaattgaatggatgttgaattaagagagagaaaatgatgtggagtgttgggaat 43618406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 15053714 - 15053661
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatg 286  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  15053714 ccattggagtggtaaaaattgaatgggtgttgaattaagagagagaaaatgatg 15053661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 35931942 - 35931889
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  35931942 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtg 35931889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 31129502 - 31129560
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||| |||||||||||| |||||| |||||||||||||||||| | ||||||||||    
T  31129502 ggtaaaagttgaatgagtgtcgaattaagagagagaaaatgatgtggagtgttgagaat 31129560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 5735369 - 5735315
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  5735369 ccattggagagggtaaaaattgaatgagtgttgaa-taagagagagaaaatgatgt 5735315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 18029488 - 18029556
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  18029488 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 18029556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 34955655 - 34955723
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  34955655 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 34955723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 5212372 - 5212305
Alignment:
Q  234 cattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  5212372 cattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 5212305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 44503249 - 44503181
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||| |||| ||||||||||||| ||||| ||||| |||||||||||||| ||| | ||||| ||||    
T  44503249 ccattgaagagataaaaattgaatgggtgttcaattaagagagagaaaatgacgtggagtgttgggaat 44503181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 36912499 - 36912445
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||    
T  36912499 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgt 36912445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 41477265 - 41477197
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||||| ||| | ||||| ||||    
T  41477265 ccattggagatggtaaaagttgaatgagtgttgaa-taagagagagaaaatgacgtggagtgttgggaat 41477197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 26632142 - 26632193
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||| |||||| |||||||||||||||| || ||||||||||||||    
T  26632142 ccattggagagagtaaaagttgaatgagtgttgaa-taagagagagaaaatga 26632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 66063 - 66181
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||       || |||||| ||||||||||||| |     
T  66063 attgaagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgagaattgaaaaagtaggtgttaaaaggtattgaaattt 66162  T
Q  328 ttttcccattgtacatggt 346  Q
    |||||||||||||||||||    
T  66163 ttttcccattgtacatggt 66181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 23089600 - 23089500
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||       |||||||||||| |||||||||||    
T  23089600 ccattggagaggtaaaaattgaatgggtgttgaattatgagagagaaaatgatgtgaagtgttgggaattaaaaaagtgggtgttgaagggtattgaaaa 23089501  T
Q  326 t 326  Q
    |    
T  23089500 t 23089500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 3454816 - 3454698
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaat 326  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||       |||| ||||||| |||||||||| |    
T  3454816 cattggagag-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaagggtattgaaatt 3454718  T
Q  327 attttcccattgtacatggt 346  Q
     |||||||||| ||||||||    
T  3454717 tttttcccattatacatggt 3454698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 29619003 - 29619121
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||| ||||       |||||||||||| ||||||||||     
T  29619003 ccattggagaggtaaaaattgaatgggtgttgaattatgagaaagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaat 29619102  T
Q  326 tattttcccattgtacatg 344  Q
    | |||| ||||||||||||    
T  29619103 ttttttgccattgtacatg 29619121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 25670895 - 25671015
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||||    
T  25670895 ccattggagagttaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaaaa 25670994  T
Q  326 tattttcccattgtacatggt 346  Q
    | | |  ||||||||||||||    
T  25670995 tttgtaaccattgtacatggt 25671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 13479815 - 13479934
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaa-aat 326  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||       |||||||||||| |||||||||   |    
T  13479815 attggagatgtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaagggtattgaatttt 13479914  T
Q  327 attttcccattgtacatggt 346  Q
     |||||||||||||||||||    
T  13479915 tttttcccattgtacatggt 13479934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 19241398 - 19241330
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||    
T  19241398 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaat 19241330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 31013833 - 31013901
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  31013833 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 31013901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 32976565 - 32976685
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||      
T  32976565 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatg 32976664  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||| |||||||| |||||    
T  32976665 tattttaccattgtaaatggt 32976685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 31008374 - 31008442
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||    
T  31008374 ccattggaaaggtaaaaattgaatgggtgttaaattaagagagagaaaatgatgtgaagtgttgagaat 31008442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 40888974 - 40888856
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||  ||    
T  40888974 attggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatgta 40888875  T
Q  328 ttttcccattgtacatggt 346  Q
    |||| |||||||| |||||    
T  40888874 ttttaccattgtaaatggt 40888856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 27942573 - 27942518
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27942573 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 27942518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 42806989 - 42807057
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||    
T  42806989 ccattagagatgtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgagaat 42807057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 30648102 - 30648157
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  30648102 ccattggagaggtaaaaattgaatgagtgttgaattaagagagataaaatggtgtg 30648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 39238494 - 39238428
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||    
T  39238494 attggagagataaaaattgaatggatgttgaattatgagagagaaaatgatgtggagtgttgggaat 39238428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 4219434 - 4219530
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||| ||||||||||||    |||||||||||||||| ||||| ||||       |||||||||||| |||||||||||    
T  4219434 ccattggagaggtaaaaattgaatgggtgttgaattat----gagaaaatgatgtgaagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 4219529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 7651085 - 7651017
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  7651085 ccattggaggggtaaaaattaaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 7651017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 36572409 - 36572464
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||    
T  36572409 ccattggagaaataaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 36572464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 42317968 - 42317918
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  42317968 attggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgat 42317918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 25652895 - 25652827
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||| ||||| ||||    
T  25652895 ccattggagagggtaaaaattcaatgagtgttgaataa-gagagagaaaatgatgtgaagtgttgggaat 25652827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 27407032 - 27407100
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgtt-gaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||| | ||||| ||||    
T  27407032 cattggagaggtaaaagttgaatgagtgttagaattaagagagagaaaataatgtggagtgttgggaat 27407100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 39008562 - 39008514
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaa 281  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  39008562 ccattggagatgtaaaaattgaatggatgttgaattatgagagagaaaa 39008514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 41153005 - 41153063
Alignment:
Q  242 aggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||| | ||||||||||    
T  41153005 aggtaaaagttgaatgagtgttgaataa-gagagagaaaatgatgtggagtgttgagaat 41153063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 4938267 - 4938213
Alignment:
Q  234 cattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgt 287  Q
    ||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||    
T  4938267 cattggagagggtaaaagttgaattagtgttgaattaagagagagaaaatgatgt 4938213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 4577087 - 4577019
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  4577087 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 4577019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 8176292 - 8176360
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  8176292 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 8176360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 34709950 - 34709895
Alignment:
Q  242 aggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    ||||||||||| |||| ||||||||||| |||||| ||||||| ||| ||||||||    
T  34709950 aggtaaaaattaaatgggtgttgaattaagagagaaaaaatgacgtggaatgttga 34709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 32363610 - 32363668
Alignment:
Q  239 gagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    |||||||||||||| |||| |||||||||||  ||||||||||| ||||| | ||||||    
T  32363610 gagaggtaaaaattaaatgggtgttgaattaaaagagagaaaataatgtggagtgttga 32363668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 14278911 - 14278843
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||| |||||||| | |||||||||||||||||| | ||||| ||||    
T  14278911 ccattggagagggtaaaagttgaatgaatgttgaataa-gagagagaaaatgatgtggagtgttgggaat 14278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 25032424 - 25032380
Alignment:
Q  243 ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||    
T  25032424 ggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 25032380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 23649157 - 23649209
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    |||||| ||||||||||||| ||| | |||||||||| || ||||||||||||    
T  23649157 ccattgaagaggtaaaaattaaataaatgttgaattaagaaagagaaaatgat 23649209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 23809414 - 23809362
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    |||||| ||||||||||||| ||| | |||||||||| || ||||||||||||    
T  23809414 ccattgaagaggtaaaaattaaataaatgttgaattaagaaagagaaaatgat 23809362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 41263444 - 41263389
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||| |||||||| |||||||| | ||||||||||||||||||    
T  41263444 ccattggagagggtaaaagttgaatgaatgttgaataa-gagagagaaaatgatgtg 41263389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 35029098 - 35029166
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  35029098 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggaatgttgggaat 35029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 45549610 - 45549728
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaata 327  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||| ||||       |||| ||||||| |||||||||| |     
T  45549610 attggagaggtaaaaattgaatgggtgttgaattatgagagaaaaaatgatgtggagtgttgggaattgaaaaagtggttgttgaagggtattgaaattt 45549709  T
Q  328 ttttcccattgtacatggt 346  Q
    |||||||||||||||||||    
T  45549710 ttttcccattgtacatggt 45549728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 36518598 - 36518478
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||       |||||||||||| | |||||||      
T  36518598 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttattgaatg 36518499  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||| |||||||| |||||    
T  36518498 tattttaccattgtaaatggt 36518478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 40302480 - 40302548
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  40302480 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 40302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 39769812 - 39769757
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39769812 ccattagagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 39769757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 30566681 - 30566615
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  30566681 attggagagataaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgagaat 30566615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 5813181 - 5813113
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||| ||||    
T  5813181 ccattggagaggtaaaaattgaataagtgttgaattaagagagagaaaatgatgtgcagtgttgggaat 5813113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 47159484 - 47159552
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  47159484 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 47159552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 33508517 - 33508566
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33508517 attggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatga 33508566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 32130260 - 32130328
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||| ||||    
T  32130260 ccattggagaggtaaaaattgaatgggtattaaattatgagagagaaaatgatgtggagtgttgggaat 32130328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 42881441 - 42881373
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| | ||||| ||||    
T  42881441 ccattggagaggtaaaaattgaattggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 42881373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 20354306 - 20354251
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  20354306 ccattggagaggtaaaaattgaatgggtgttgaattatgatagaaaaaatgatgtg 20354251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 30720203 - 30720148
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  30720203 ccattgaagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtg 30720148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 32748879 - 32748812
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| | ||||| ||||    
T  32748879 cattggagatgtaaaaattgaatgagtgttaaattatgagagagaaaataatgtggagtgttgggaat 32748812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 26812196 - 26812076
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||| |||||||| || | ||||| ||||        ||||||||||| ||||||||||     
T  26812196 ccattggagaggtaaaatttgaatgagtattgaattatgaaagataaaatgatatggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaat 26812097  T
Q  326 tattttcccattgtacatggt 346  Q
    | |||| ||||||||||||||    
T  26812096 ttttttgccattgtacatggt 26812076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 38351660 - 38351607
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  38351660 attggagaggtaaaaattaaatgaatgttgaattatgaaagagaaaatgatgtg 38351607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 33078776 - 33078823
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaat 282  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  33078776 attggagaggtaaaaattgaatgaatgttgaattaagagagagaaaat 33078823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 37951832 - 37951788
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagag 277  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  37951832 ccattggagaggtaaaaattgaatgggtgttgaattaagagagag 37951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 22191303 - 22191248
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||    
T  22191303 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 22191248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 22656750 - 22656695
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| ||||||||||||| ||||  ||||||||||  |||||||||||||||||    
T  22656750 ccattgaagaggtaaaaattaaatggatgttgaattaaaagagagaaaatgatgtg 22656695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 25038582 - 25038639
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaa 290  Q
    |||||||||||| ||||| |||||||||||| |||| | ||||||||||||||||||||    
T  25038582 ccattggagagggtaaaacttgaatgagtgtcgaataa-gagagagaaaatgatgtgaa 25038639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 37887928 - 37887862
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||| ||||||||||||| ||||  |||||||||| |||||| ||||||||||| | ||||| ||||    
T  37887928 attgaagaggtaaaaattaaatggatgttgaattaagagagataaaatgatgtggagtgttgggaat 37887862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 114573 - 114505
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| | ||||| || |||||||||||||| | |||||||||||||||||| | ||||||||||    
T  114573 ccattggagatgataaaagttaaatgagtgttgaataa-gagagagaaaatgatgtggagtgttgagaat 114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 22737584 - 22737652
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| ||||||| |||||||| |||||||| | |||||||||||||||||| | ||||| ||||    
T  22737584 ccattggagaaggtaaaagttgaatgaatgttgaataa-gagagagaaaatgatgtggagtgttgggaat 22737652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 21654929 - 21654874
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||| ||||  ||||||||||||||||| | ||||||||||||||||||    
T  21654929 ccattggagagggtaaatgttgaatgagtgttgaataa-gagagagaaaatgatgtg 21654874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 43571095 - 43571138
Alignment:
Q  244 gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  43571095 gtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtg 43571138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 48984990 - 48984935
Alignment:
Q  233 ccattggaga-ggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||| ||||||  ||||||||||||||||| | ||||||||||||||||||    
T  48984990 ccattggagatggtaaatgttgaatgagtgttgaataa-gagagagaaaatgatgtg 48984935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 51494461 - 51494581
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaa 325  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||       |||||||||||| | | ||||| |    
T  51494461 ccattggagaggtaaaaattgaatgaatgttgaattaagagagagaaaatgatgtggagtgttgagaattaaaaaagtgggtgttgaaggttgttgaata 51494560  T
Q  326 tattttcccattgtacatggt 346  Q
    |||||| |||||||| |||||    
T  51494561 tattttaccattgtaaatggt 51494581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 48404409 - 48404342
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||    
T  48404409 cattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaatgatgtggagtgttgggaat 48404342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 31159467 - 31159399
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  31159467 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 31159399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 36230437 - 36230369
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| ||||    
T  36230437 ccattggagaggtaaaaattgaatgggtgttgaattaagagagataaaatgatgtgaagtgttgggaat 36230369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 37822649 - 37822581
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatga-gagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||    
T  37822649 cattggagaggtaaaaattgaatgagtgttgaattaagaggagagaaaatgatgtggagtgttgagaat 37822581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 45239218 - 45239150
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  45239218 ccattggagaggtaaaaattgaatgagtgttgaataaagagagagaaaatgatgtggagtgttgggaat 45239150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 45456140 - 45456208
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| ||||    
T  45456140 ccattggagaggtaaaaattgaatgagtgttgaattaagagagagaaaattatgtggagtgttgggaat 45456208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 48388097 - 48388165
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  48388097 ccattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 48388165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 37646550 - 37646617
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  37646550 cattggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 37646617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 19578901 - 19578967
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  19578901 attggagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 19578967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 31468211 - 31468145
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||| ||||    
T  31468211 attggagaggtaaaaattgaatgaatgttgaattaagagagagaaaatgatgtggagtgttgggaat 31468145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 23092848 - 23092729
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaat 326  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||| | ||||| ||||       |||||||||||  ||||||||| ||    
T  23092848 cattggagaggtaaaaactgaatgggtgttgaattaagagagagaaaatgacgtggagtgttgggaattgaaaaagtgggtgttgaggggtattgaatat 23092749  T
Q  327 attttcccattgtacatggt 346  Q
    ||||| |||||||| |||||    
T  23092748 attttgccattgtaaatggt 23092729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 2478317 - 2478385
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| | ||||| ||||    
T  2478317 ccattggagaggtaaaaattgaaagggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 2478385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 27630449 - 27630517
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||||    
T  27630449 ccattggagatgtaaaaattgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaat 27630517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 35847117 - 35847165
Alignment:
Q  240 agaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35847117 agaggtaaaaattgaatgggtgttgaattatgagagagaaaatgatgtg 35847165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 37420333 - 37420401
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||||    
T  37420333 ccattggagatgtaaaaattgaatgagtgttgaattaagagagataaaatgatgtggagtgttgggaat 37420401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 51156877 - 51156997
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat--------gtgggtgttgaaaggtattgaaa 324  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||  || | |||||| |||        ||| |||||||| ||||||||||    
T  51156877 ccattggagaggtaaaa-ttgaatgggtgttaaattatgagagagaaaatgacatggagtgttgaaaattgaaaaaagtgagtgttgaagggtattgaaa 51156975  T
Q  325 atattttcccattgtacatggt 346  Q
    || |||||||||||||||||||    
T  51156976 attttttcccattgtacatggt 51156997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 14096769 - 14096719
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgat 285  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  14096769 attggagaggtaaaaattgaatgagtgttgaattaagagagataaaatgat 14096719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 8464179 - 8464111
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||    
T  8464179 ccattggagagagtaaaaattgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgagaat 8464111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 30878535 - 30878588
Alignment:
Q  235 attggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  30878535 attggagaggtaaaaattgaatggatgttgaattaagagagagaaaatgatgtg 30878588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 37691279 - 37691347
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||| ||||| | ||||| ||||    
T  37691279 ccattggagaggtaaaaattgaatggatgttgaattaagagagagaaaataatgtggagtgttgggaat 37691347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 29523782 - 29523715
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||||||||||||| | ||||| ||||    
T  29523782 cattggagatgtaaaaattgaatggatgttgaattaagagagagaaaatgatgtggagtgttgggaat 29523715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 33164491 - 33164424
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||| || || ||||||| ||||    
T  33164491 cattggagatgtaaaaattgaatgagtgttgaattaagagagataaaataatctggaatgttgggaat 33164424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 45623519 - 45623574
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtg 288  Q
    |||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  45623519 ccataggagagataaaaattaaatgagtgttgaattaagagagagaaaatgatgtg 45623574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 17783457 - 17783389
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||| ||||||| ||||    
T  17783457 ccattggagagagtaaaagttgaatgagtgttgaataa-gagagagaaaatgatgtggaatgttgggaat 17783389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 44334369 - 44334301
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||| | ||||||||||    
T  44334369 ccattggagagagtaaaagttgaatgagtgttgaataa-gagagagaaaatgatgtggagtgttgagaat 44334301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 44929279 - 44929347
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| ||||||||||||||||| |  |||||||||||||| |||||||||||||||    
T  44929279 ccattggagagggtaaaagttgaatgagtgttgaataaa-agagagaaaatgatttgaaatgttgagaat 44929347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 47300487 - 47300554
Alignment:
Q  234 cattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||| | |||||||||||||| |||||||||||  ||||||||||||||||| | || |||||||    
T  47300487 cattggaaaagtaaaaattgaatgtgtgttgaattaaaagagagaaaatgatgtggagtgctgagaat 47300554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 8468398 - 8468336
Alignment:
Q  239 gagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    ||||||||||| || |||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  8468398 gagaggtaaaagttaaatgtgtgttgaattaagagagagaaaatgatgtggagtgttgggaat 8468336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 29919451 - 29919398
Alignment:
Q  233 ccattggagaggtaaaaa-ttgaatgagtgttgaattatgagagagaaaatgat 285  Q
    |||||||||||||||||| ||||||  ||||||||||| |||||||||||||||    
T  29919451 ccattggagaggtaaaaaattgaataggtgttgaattaagagagagaaaatgat 29919398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 44451259 - 44451327
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  44451259 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 44451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 44651153 - 44651085
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| | ||||| ||||    
T  44651153 ccattggagagggtaaaagttgaatgagtgttgaa-taagagagagaaaatgatgtggagtgttgggaat 44651085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 51520298 - 51520233
Alignment:
Q  233 ccattggagagg-taaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttga 297  Q
    |||||||||||| ||||| |||||| |||||| ||||| |||||| ||||||||||| | ||||||    
T  51520298 ccattggagagggtaaaagttgaataagtgtttaattaagagagaaaaaatgatgtggagtgttga 51520233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 52933757 - 52933808
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||| |||||| |||||||||||||||| || ||||||||||||||    
T  52933757 ccattggagagtgtaaaagttgaatgagtgttgaa-taagagagagaaaatga 52933808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 52941392 - 52941443
Alignment:
Q  233 ccattggagag-gtaaaaattgaatgagtgttgaattatgagagagaaaatga 284  Q
    ||||||||||| |||||| |||||||||||||||| || ||||||||||||||    
T  52941392 ccattggagagtgtaaaagttgaatgagtgttgaa-taagagagagaaaatga 52941443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 57732 - 57800
Alignment:
Q  233 ccattggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat 301  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||    
T  57732 ccattgaagaggtaaaaattgaatgggtgttgaattaagagagagaaaatgatgtggagtgttgggaat 57800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 5316 - 5432
Alignment:
Q  237 tggagaggtaaaaattgaatgagtgttgaattatgagagagaaaatgatgtgaaatgttgagaat-------gtgggtgttgaaaggtattgaaaatatt 329  Q
    |||||||||||||||||||||  |||||||||| || ||||||||||||||| | ||||| ||||       |||||||||||  ||||||||| |||||    
T  5316 tggagaggtaaaaattgaatggatgttgaattaagaaagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaggggtattgaatatatt 5415  T
Q  330 ttcccattgtacatggt 346  Q
    || |||||||| |||||    
T  5416 ttgccattgtaaatggt 5432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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