View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_low_5 (Length: 396)
Name: NF1937_low_5
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 24883831 - 24884198
Alignment:
| Q |
19 |
acagcatgatatgatattgttatatggagaacatgatccctagatatgaggttgtctttaaagatatgggcttcagaatgcccttctcggattttcaaaa |
118 |
Q |
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| T |
24883831 |
acagcatgatatgataatgttatacggagaacatgatccctagatatgaggttgtctttaaagatatgggcttcagaatgcccttctcggattttcaaaa |
24883930 |
T |
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| Q |
119 |
tgagatttttaaatggcttgaattagatccctcgtaactttatccaaatttgatggacttcatcccggccttcaaataatgtgtgcggcgcacattgaat |
218 |
Q |
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| T |
24883931 |
tgagatttttaaatggcttgaattagatccctcgtaactttatccaaatttgatggacttcatcccggccttcaaataatgtgtgcggcgcacattgaat |
24884030 |
T |
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| Q |
219 |
tcgtccatacatcgccttcttcttagcatctacactgattttgttcaaagtttcaagcataagtatttgatcataaagccgaagaacatgatggcttcaa |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24884031 |
tcgtccgtacatcgccttcttcttagcatctacactgattttgttcaaagtttcaagcataagtatttgatcataaaaccgaagaacatgatggcttcaa |
24884130 |
T |
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| Q |
319 |
atggtgtgatacaaacaagaagatgcgttatggttgatgagtcctttgttgaagtagaggtccctatg |
386 |
Q |
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| T |
24884131 |
atggtgtgatacaaacaagaagacgcgttatggttgatgagtcctttgttgaagtagaggtccctatg |
24884198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27734106 - 27734158
Alignment:
| Q |
63 |
tatgaggttgtctttaaagatatgggcttcagaatgcccttctcggattttca |
115 |
Q |
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| T |
27734106 |
tatgaggttgtctttaaagagatgggtttcagaatgcccttcttagattttca |
27734158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 17166434 - 17166368
Alignment:
| Q |
47 |
gaacatgatccctagatatgaggttgtctttaaagatatgggcttcagaatgcccttctcggatttt |
113 |
Q |
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| T |
17166434 |
gaacatgatacctatgtacgagattgtgttcaaagatatgagcttcagaatgcccttctcggatttt |
17166368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 17172011 - 17171945
Alignment:
| Q |
47 |
gaacatgatccctagatatgaggttgtctttaaagatatgggcttcagaatgcccttctcggatttt |
113 |
Q |
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| T |
17172011 |
gaacatgattcctatgtacgagattgtgttcaaagatatgagcttcagaatgcccttctcggatttt |
17171945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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