View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937_low_6 (Length: 384)

Name: NF1937_low_6
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937_low_6
NF1937_low_6
[»] chr2 (21 HSPs)
chr2 (193-373)||(18299702-18299883)
chr2 (6-94)||(18300650-18300738)
chr2 (6-94)||(24475312-24475400)
chr2 (5-94)||(18299460-18299549)
chr2 (1-86)||(11996790-11996875)
chr2 (12-94)||(24476784-24476866)
chr2 (1-56)||(26544231-26544286)
chr2 (1-56)||(26545484-26545539)
chr2 (1-59)||(22587583-22587640)
chr2 (1-86)||(18797330-18797415)
chr2 (1-82)||(18904450-18904530)
chr2 (2-50)||(22587923-22587971)
chr2 (1-48)||(22848274-22848321)
chr2 (1-47)||(802563-802609)
chr2 (1-59)||(28618004-28618062)
chr2 (276-326)||(45323231-45323281)
chr2 (1-56)||(11258774-11258829)
chr2 (1-48)||(13030372-13030419)
chr2 (1-47)||(810753-810799)
chr2 (6-48)||(21837127-21837169)
chr2 (1-43)||(23869511-23869553)
[»] scaffold0019 (3 HSPs)
scaffold0019 (203-373)||(61030-61210)
scaffold0019 (5-94)||(60177-60266)
scaffold0019 (5-94)||(61384-61473)
[»] chr1 (30 HSPs)
chr1 (1-86)||(35595125-35595210)
chr1 (1-64)||(51684449-51684512)
chr1 (1-59)||(39153077-39153134)
chr1 (2-59)||(39152015-39152071)
chr1 (2-59)||(45157170-45157226)
chr1 (1-56)||(51685728-51685783)
chr1 (6-48)||(39221402-39221444)
chr1 (1-75)||(41364911-41364985)
chr1 (1-75)||(52827430-52827504)
chr1 (1-75)||(52828014-52828088)
chr1 (1-86)||(35594298-35594383)
chr1 (1-86)||(46525734-46525818)
chr1 (1-49)||(45148663-45148711)
chr1 (1-49)||(45149940-45149988)
chr1 (1-56)||(11436125-11436180)
chr1 (1-48)||(37526849-37526896)
chr1 (1-48)||(43058868-43058915)
chr1 (1-56)||(43378676-43378731)
chr1 (1-48)||(50680414-50680461)
chr1 (2-48)||(43059977-43060023)
chr1 (1-86)||(46524622-46524706)
chr1 (1-45)||(36612935-36612979)
chr1 (1-49)||(40384808-40384856)
chr1 (1-56)||(11437162-11437217)
chr1 (1-48)||(25652797-25652844)
chr1 (1-64)||(41366086-41366149)
chr1 (24-62)||(13574922-13574960)
chr1 (1-50)||(45156132-45156181)
chr1 (1-49)||(39699737-39699785)
chr1 (1-49)||(44404525-44404573)
[»] chr5 (18 HSPs)
chr5 (1-86)||(42195215-42195300)
chr5 (1-86)||(25055495-25055580)
chr5 (1-86)||(42196133-42196218)
chr5 (1-59)||(16650075-16650133)
chr5 (1-48)||(18486873-18486920)
chr5 (1-59)||(24332996-24333053)
chr5 (1-56)||(16650818-16650873)
chr5 (1-48)||(25524069-25524116)
chr5 (1-56)||(2186853-2186908)
chr5 (1-48)||(18485228-18485275)
chr5 (5-48)||(19752998-19753041)
chr5 (1-56)||(22940586-22940641)
chr5 (1-75)||(5730806-5730880)
chr5 (1-63)||(5778792-5778854)
chr5 (1-47)||(25523152-25523198)
chr5 (1-49)||(28538759-28538807)
chr5 (5-45)||(2685872-2685912)
chr5 (1-49)||(36486458-36486506)
[»] scaffold1303 (1 HSPs)
scaffold1303 (1-86)||(1522-1607)
[»] chr4 (27 HSPs)
chr4 (1-86)||(1834203-1834288)
chr4 (16-94)||(49306871-49306949)
chr4 (6-94)||(33296311-33296399)
chr4 (5-94)||(49307955-49308042)
chr4 (1-75)||(25685017-25685091)
chr4 (1-56)||(1290161-1290216)
chr4 (1-75)||(5525442-5525516)
chr4 (1-63)||(10470629-10470691)
chr4 (1-86)||(1835035-1835120)
chr4 (2-86)||(50909606-50909689)
chr4 (1-56)||(13509322-13509377)
chr4 (2-56)||(1289181-1289235)
chr4 (1-59)||(10448221-10448278)
chr4 (1-75)||(13386476-13386550)
chr4 (1-82)||(46638662-46638743)
chr4 (1-59)||(10447090-10447147)
chr4 (1-63)||(10471344-10471406)
chr4 (1-63)||(13386099-13386161)
chr4 (1-63)||(25685778-25685840)
chr4 (2-56)||(37728528-37728582)
chr4 (39-86)||(1964374-1964421)
chr4 (1-56)||(19750538-19750593)
chr4 (1-56)||(19789213-19789268)
chr4 (1-63)||(5526082-5526144)
chr4 (2-48)||(12129707-12129753)
chr4 (1-49)||(31599872-31599920)
chr4 (2-86)||(31600919-31601002)
[»] chr8 (30 HSPs)
chr8 (1-86)||(22220471-22220556)
chr8 (2-86)||(2379857-2379941)
chr8 (1-56)||(30335722-30335777)
chr8 (1-59)||(30336461-30336519)
chr8 (1-49)||(24123868-24123916)
chr8 (1-48)||(10006427-10006474)
chr8 (1-56)||(43661348-43661403)
chr8 (2-86)||(2378944-2379028)
chr8 (1-48)||(10007734-10007781)
chr8 (1-50)||(30568969-30569018)
chr8 (1-50)||(30570225-30570274)
chr8 (1-49)||(24122965-24123013)
chr8 (1-48)||(1824049-1824096)
chr8 (1-48)||(1858494-1858541)
chr8 (1-48)||(5514064-5514111)
chr8 (1-64)||(8389644-8389707)
chr8 (5-48)||(11456696-11456739)
chr8 (1-56)||(43661786-43661841)
chr8 (2-59)||(40471107-40471164)
chr8 (2-42)||(32207302-32207342)
chr8 (2-53)||(40469424-40469475)
chr8 (12-62)||(11289045-11289095)
chr8 (34-63)||(6041368-6041397)
chr8 (34-63)||(6045005-6045034)
chr8 (1-86)||(22221297-22221382)
chr8 (1-86)||(22227639-22227724)
chr8 (1-86)||(24359890-24359975)
chr8 (1-50)||(29043481-29043530)
chr8 (34-62)||(755986-756014)
chr8 (1-49)||(8388545-8388593)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-86)||(48390-48474)
[»] chr3 (22 HSPs)
chr3 (1-64)||(46721175-46721238)
chr3 (1-48)||(47615548-47615595)
chr3 (1-75)||(46720024-46720097)
chr3 (1-75)||(51470055-51470129)
chr3 (2-59)||(19984933-19984989)
chr3 (1-56)||(7758485-7758540)
chr3 (1-56)||(23769939-23769994)
chr3 (1-56)||(23770370-23770425)
chr3 (1-59)||(19986031-19986088)
chr3 (1-75)||(51470399-51470473)
chr3 (1-56)||(47609780-47609835)
chr3 (1-63)||(47610536-47610598)
chr3 (1-86)||(534582-534667)
chr3 (1-94)||(52105592-52105685)
chr3 (1-49)||(31645056-31645104)
chr3 (1-49)||(54540760-54540808)
chr3 (5-48)||(12700260-12700303)
chr3 (5-56)||(40426741-40426792)
chr3 (1-48)||(47614268-47614315)
chr3 (12-62)||(8240633-8240683)
chr3 (1-47)||(34019117-34019163)
chr3 (1-49)||(54986977-54987025)
[»] chr7 (24 HSPs)
chr7 (317-365)||(596439-596487)
chr7 (6-94)||(597211-597299)
chr7 (1-49)||(14999125-14999173)
chr7 (1-48)||(22629569-22629616)
chr7 (1-75)||(3227538-3227612)
chr7 (1-75)||(31949405-31949479)
chr7 (1-75)||(31949746-31949820)
chr7 (1-45)||(14998063-14998107)
chr7 (1-48)||(7500537-7500584)
chr7 (1-48)||(18372428-18372475)
chr7 (2-48)||(7501823-7501869)
chr7 (1-75)||(17781744-17781818)
chr7 (2-75)||(3227191-3227264)
chr7 (2-46)||(21505498-21505542)
chr7 (1-75)||(127418-127492)
chr7 (1-63)||(47525323-47525385)
chr7 (1-49)||(770731-770779)
chr7 (1-49)||(32253397-32253445)
chr7 (1-49)||(42886256-42886304)
chr7 (1-48)||(18371507-18371554)
chr7 (1-48)||(22630423-22630470)
chr7 (24-62)||(327349-327387)
chr7 (2-48)||(47369865-47369911)
chr7 (1-74)||(30439303-30439376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-74)||(49378-49451)
[»] chr6 (13 HSPs)
chr6 (1-74)||(27437911-27437984)
chr6 (1-82)||(34834516-34834597)
chr6 (1-49)||(1829573-1829621)
chr6 (1-48)||(7314962-7315009)
chr6 (2-48)||(7316265-7316311)
chr6 (6-75)||(3722467-3722536)
chr6 (1-63)||(8659348-8659410)
chr6 (2-60)||(26717072-26717130)
chr6 (2-63)||(3721696-3721757)
chr6 (2-51)||(5658840-5658889)
chr6 (16-64)||(6842238-6842286)
chr6 (1-64)||(8660159-8660222)
chr6 (1-48)||(17496881-17496928)
[»] scaffold0320 (1 HSPs)
scaffold0320 (1-48)||(19571-19618)
[»] scaffold0017 (1 HSPs)
scaffold0017 (12-62)||(27850-27900)
[»] scaffold0049 (1 HSPs)
scaffold0049 (5-58)||(7880-7933)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 193 - 373
Target Start/End: Original strand, 18299702 - 18299883
Alignment:
Q  193 cttcatcatctctacacatgattcattccagattattgacagagaaatgtaaaacacacaacacaagacnnnnnnnncaaacat-ggagtttcctcgacc 291  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||    
T  18299702 cttcatcatctctacacatgattcattcaagattattgacagagaaatgtaaaacacacaacacaagacaaaaaaaacaaacattggagtttcctcgacc 18299801  T
Q  292 aaaattgttagggagcaacctaagatcatttcatttcattgtttttctcacatgttcctcttgcttatacctctgtatctct 373  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18299802 aaaattgtttgggagcaacctaagatcatttcatttcattgtttttctcacatgttcctcttgcttatacctctgtatctct 18299883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 18300738 - 18300650
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  18300738 atttagcccctttgcatctttggtccttttggacaattttgatcaagtcaatgctgattggacatgccacacgtgtaattacctatttt 18300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 24475312 - 24475400
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24475312 atttagctcatttgcatctttggtccttttggtcaattttgaccaagtcaatgctgattggacattccacgcgtgtaattacctatttt 24475400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 18299460 - 18299549
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  18299460 gatttagcccttttgcatctttgatccttttggtcaattttgaccaagtcaatgctgattggacatgtcacgcctgtaattacctatttt 18299549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11996790 - 11996875
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| | || |||||| |||||||||    
T  11996790 ctaagatttaacccctttacatctttggtccttttggtcaattttgaccaagtcaacgctgatttggcaagccacgtgtgtaatta 11996875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 24476866 - 24476784
Alignment:
Q  12 cccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||||| || |||| | |||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24476866 cccctttgtatttttgattcttttgatcaattttgaccaagtcaatgctgattagacatgccacgcatgtaattacctatttt 24476784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26544231 - 26544286
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||    
T  26544231 ctaagatttagcacctttgcatatttggtccttttgatcaattttgaccaagtcaa 26544286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26545539 - 26545484
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||    
T  26545539 ctaagatttagcccctttgcatctttggtcattttgatcaattttgaccaaatcaa 26545484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22587583 - 22587640
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||    
T  22587583 ctaagatttagcctctttgcatctttggtccttttggccaattttgacc-agtcaatgc 22587640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18797330 - 18797415
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||| |||||||||||||||||||||||||||||  | ||||||||||   ||||| ||| ||| | ||||||||| |||||||||    
T  18797330 ctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaatta 18797415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18904450 - 18904530
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgta 82  Q
    |||||| ||||||||||| ||||||||||||||| || ||||||| ||  |||||| ||||| ||| |||||||||||||||    
T  18904450 ctaagaattagcccctttacatctttggtccttttggccaattttaacttagtcaaagctgagtgg-catgccacgcgtgta 18904530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 22587971 - 22587923
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgacca 50  Q
    ||||||||||||||||||||||||||||||||| || |||||| |||||    
T  22587971 taagatttagcccctttgcatctttggtccttttggccaatttcgacca 22587923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22848274 - 22848321
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||    
T  22848274 ctaagatttagcccctttgcagctttggtccttttgatcaattttgac 22848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 802609 - 802563
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttga 47  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||    
T  802609 ctaagattttacccctttgcatatttggtcctttaggtcaattttga 802563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28618004 - 28618062
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||| || |||||||    
T  28618004 ctaagatttagcccctttgcatctttggttattttggtctattttgactaattcaatgc 28618062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 45323281 - 45323231
Alignment:
Q  276 tggagtttcctcgaccaaaattgttagggagcaacctaagatcatttcatt 326  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  45323281 tggagtttcctcaaccaaaattgtttcggaacaacctaagatcatttcatt 45323231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11258829 - 11258774
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||| |||||  |||| |||||| |||||||||||||| ||||||    
T  11258829 ctaagatttagccccattgcagatttgatccttttggtcaattttgacctagtcaa 11258774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13030372 - 13030419
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||| | ||||||||||||||| ||| |||||||||||||    
T  13030372 ctaagatttagctcttttgcatctttggtcattttggtcaattttgac 13030419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 810799 - 810753
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttga 47  Q
    |||||||||  ||||||||||| ||||||||||||| ||||||||||    
T  810799 ctaagattttacccctttgcatatttggtcctttagatcaattttga 810753  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 21837127 - 21837169
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||| ||| | |||||||||||    
T  21837127 atttagcccctttgcatctttggtcattttgatcaattttgac 21837169  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23869553 - 23869511
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaatt 43  Q
    ||||||||||||||||||||||||||| |||||| | ||||||    
T  23869553 ctaagatttagcccctttgcatctttgatccttttgttcaatt 23869511  T

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Target: scaffold0019 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 203 - 373
Target Start/End: Complemental strand, 61210 - 61030
Alignment:
Q  203 tctacacatgattcattccagattattgacagaga----aatgtaaaacacacaacacaagacnnnnnnnncaaacat-ggagtttcctcgaccaaaatt 297  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||        ||||||| ||||||||||| |||||||||    
T  61210 tctacacatgattcattccagattattgacagagagagaaatgtaaaacacacaacacaagacaaaaaaaacaaacattggagtttcctcaaccaaaatt 61111  T
Q  298 gttagggagcaacctaagatcatttcatttcatt-----gtttttctcacatgttcctcttgcttatacctctgtatctct 373  Q
    ||| ||||||||||||||||||||||||||||||     |||||||||||||||||||||| |||||||||||| ||||||    
T  61110 gtttgggagcaacctaagatcatttcatttcatttcattgtttttctcacatgttcctcttacttatacctctgcatctct 61030  T

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Target: scaffold0019; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 60177 - 60266
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  60177 gatttagcccctttgcatctttggtctttttggtcaattttgaccaagtcaatgctgattgaacatgccacgcgtgtaattacctatttt 60266  T

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Target: scaffold0019; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 61473 - 61384
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  61473 gatttagcccttttgcatctttggtccttttggtcaattttgaccaagtcaatgctgactggacatgccacacgtgtaattacctatttt 61384  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35595210 - 35595125
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  35595210 ctaagatttagcccctttgcatctttggtccttttggtcaattttgaccaagtcaatgctgatttggcatgccacgtgtgtaatta 35595125  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51684449 - 51684512
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  51684449 ctaagatttagcccctttgcatctttggtccttttggccaattttgaccaagtcaacgctgatt 51684512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39153134 - 39153077
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39153134 ctaagatttaacccctttgcatctttggtccttttggtcaattttgacc-agtcaatgc 39153077  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 39152015 - 39152071
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39152015 taagatttaacccctttgcatctttggtccttttggtcaattttgacc-agtcaatgc 39152071  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 45157226 - 45157170
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  45157226 taagatttaacccctttgcatctttggtccttttggtcaattttgacc-agtcaatgc 45157170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51685783 - 51685728
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||    
T  51685783 ctaagatttagcccctttgcatctttggtccttttggccaattttaaccaattcaa 51685728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 39221402 - 39221444
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  39221402 atttagcccctttgcatctttggtccttttggtcaattttgac 39221444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41364911 - 41364985
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||| ||| | |||||||||||| |||||| ||||||| | ||||||||    
T  41364911 ctaagatttagccccattgcaactttggtcattttgatcaattttgacctagtcaacgctgatttggcatgccac 41364985  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52827430 - 52827504
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| |  |||||||||||||||||| || |||| | ||||||||    
T  52827430 ctaagatttagccccattgcaactttggtccttttgaccaattttgaccaagtcaacgccgatttggcatgccac 52827504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52828088 - 52828014
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||| | ||||||||    
T  52828088 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgatttggcatgccac 52828014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35594298 - 35594383
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||| |||||||||||||||||||||||||||||  | ||||||||||   ||||| ||| ||| | ||||||||| |||||||||    
T  35594298 ctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaatta 35594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46525818 - 46525734
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||||||  | || || ||| ||||||||||||||||||||| ||| ||| | ||||||||| |||||||||    
T  46525818 ctaagatttagcccctttgcaattgtgatctttt-ggtcaattttgaccaagtcaacgcttatttggcatgccacgtgtgtaatta 46525734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45148663 - 45148711
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||||    
T  45148663 ctaagatttaacccctttgcatctttggtccttttggccaattttgacc 45148711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45149988 - 45149940
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||||||||||||||| |||||| || |||||||||||    
T  45149988 ctaagatttagcccctttgcatctttgatccttttggccaattttgacc 45149940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11436125 - 11436180
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||| ||| |||||||||||||| |||| |||||||||||||| ||||||    
T  11436125 ctaagatttaacccatttgcatctttggttcttttggtcaattttgaccgagtcaa 11436180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37526896 - 37526849
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||    
T  37526896 ctaagatttagcccctttgcatctttggtctttttgatcaattttgac 37526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43058868 - 43058915
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||    
T  43058868 ctaagatttagcccctttacatctttgatccttttggtcaattttgac 43058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43378731 - 43378676
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||| |||||||||||||  |||||| |||| ||||||||||||||||    
T  43378731 ctaagatttagcacctttgcatctttaatccttttggtcgattttgaccaagtcaa 43378676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50680414 - 50680461
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  50680414 ctaagatttaacccctttgcatctttgatccttttggtcaattttgac 50680461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 43060023 - 43059977
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  43060023 taagatttagctcatttgcatctttggtccttttggtcaattttgac 43059977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46524622 - 46524706
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||||||  | || || ||| || |||||||||||||||||| ||| ||| | ||||||||| |||||||||    
T  46524622 ctaagatttagcccctttgcaattgtgatctttt-ggccaattttgaccaagtcaacgcttatttggcatgccacgtgtgtaatta 46524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36612935 - 36612979
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaatttt 45  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||||    
T  36612935 ctaagatttagtccctttgcatctttggtcattttggtcaatttt 36612979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40384808 - 40384856
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||| |||||||| |||||||||||||||||||| || |||||||||||    
T  40384808 ctaaaatttagcctctttgcatctttggtccttttggccaattttgacc 40384856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11437217 - 11437162
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||| ||| ||| |||||||| |||||| |||||||||||||| ||||||    
T  11437217 ctaagatttaacccttttacatctttgatccttttggtcaattttgaccgagtcaa 11437162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25652797 - 25652844
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||| ||||||||||||||| ||| || ||||||||||    
T  25652797 ctaagatttagcccatttgcatctttggtcattttggccaattttgac 25652844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41366149 - 41366086
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    ||||||||||||||| ||||| |||||||||||| |  || |||||||| |||||| |||||||    
T  41366149 ctaagatttagccccattgcaactttggtccttttgaccacttttgacctagtcaacgctgatt 41366086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 13574922 - 13574960
Alignment:
Q  24 tttggtcctttaggtcaattttgaccaagtcaatgctga 62  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  13574922 tttggtcccctaggtcaattttgaccaagtcaatgctga 13574960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45156132 - 45156181
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacca 50  Q
    |||||||||| || ||||| |||||||||| ||| |||||||||||||||    
T  45156132 ctaagatttaacctctttgtatctttggtctttttggtcaattttgacca 45156181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39699785 - 39699737
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  39699785 ctaagatttagccccattgcaactttaatccttttggtcaattttgacc 39699737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44404525 - 44404573
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||| ||||||||  ||||||||||||||| ||| ||||||||||||||    
T  44404525 ctaaaatttagccaatttgcatctttggtcattttggtcaattttgacc 44404573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 42195215 - 42195300
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||| |||||||||    
T  42195215 ctaagatttagcccctttgcatctttggtccttttggtcaattttgaccaagtcaacgctgatttggcatgccacgtgtgtaatta 42195300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25055495 - 25055580
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||| |||||||||    
T  25055495 ctaagatttagcccatttgcatctttggtccttttgatcaattttgagcaagtcaatgctgatttggcatgccacgtgtgtaatta 25055580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42196218 - 42196133
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||  |||||||||    
T  42196218 ctaagatttagcccatttgcatctttggtccttttggtcaattttgaccaagtcaacgctgatttggcatgccacatgtgtaatta 42196133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16650075 - 16650133
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16650075 ctaagatttaacccctttgcatctttggtccttttggtcaattttgaccaagtcaatgc 16650133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18486920 - 18486873
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  18486920 ctaagatttagcccctttgcatctttggtccttttggtcaattttgac 18486873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24332996 - 24333053
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  24332996 ctaagatttaacccctttgcatctttggtccttttggtcaattttgacc-agtcaatgc 24333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16650873 - 16650818
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  16650873 ctaaggtttagcccatttgcatctttggtccttttggtcaattttgatcaagtcaa 16650818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25524116 - 25524069
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25524116 ctaagatttagcccctttgcatctttagtccttttggtcaattttgac 25524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2186853 - 2186908
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||||  ||| ||||||||||||||| ||||||||||||||| |||||    
T  2186853 ctaagatttagccattttacatctttggtccttttggtcaattttgaccaggtcaa 2186908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18485228 - 18485275
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||||    
T  18485228 ctaagatttagcccctttgcatctttgatccttttggttaattttgac 18485275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 19752998 - 19753041
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  19752998 gatttagccccattgcatctttggtccttttggtcaattttgac 19753041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22940641 - 22940586
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||| ||||||||||||| |||||||  |||||| |||||||||||||||||||||    
T  22940641 ctaaaatttagccccttttcatcttttatccttttggtcaattttgaccaagtcaa 22940586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5730880 - 5730806
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    |||||||||| |||| ||||| ||||||| |||| | |||||||||||| |||||| ||||||| | ||||||||    
T  5730880 ctaagatttaaccccattgcaactttggttcttttgatcaattttgacctagtcaacgctgatttggcatgccac 5730806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5778854 - 5778792
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  5778854 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 5778792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25523152 - 25523198
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttga 47  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||||    
T  25523152 ctaagatttagcccctttgcatctttgatccttttgatcaattttga 25523198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28538759 - 28538807
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||||||||| ||||| ||||||  |||||||||||||    
T  28538759 ctaagatttagcccctttgcaactttgatcctttttgtcaattttgacc 28538807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2685872 - 2685912
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaatttt 45  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  2685872 gatttagcccatttgcatctttggtccttttgatcaatttt 2685912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36486506 - 36486458
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||| ||||||||| ||||| ||||||  |||||||||||||    
T  36486506 ctaagatttagtccctttgcaactttgatcctttttgtcaattttgacc 36486458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1522 - 1607
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||  |||||||||    
T  1522 ctaagatttagcccatttgcatctttggtccttttggtcaattttgaccaagtcaatgctgatttggcatgccacatgtgtaatta 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1834203 - 1834288
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||| |||||||||    
T  1834203 ctaagatttagcccatttgcatctttggtccttttggtcaattttgaccaaatcaatgctgatttggcatgccacgtgtgtaatta 1834288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 49306871 - 49306949
Alignment:
Q  16 tttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||||||||||||||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  49306871 tttgcatctttggtcctttttatcaattttgacaaagtcaatgttgattggacatgccacgcgtgtaattacctatttt 49306949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 33296311 - 33296399
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    ||||||| | |||||||||||| || ||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  33296311 atttagctcatttgcatctttgatcattttggtcaattttaaccaaatcaatgctgattggacatgccacgcatgtaattacctatttt 33296399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 49308042 - 49307955
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    ||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||    
T  49308042 gattttgcccctgcgcatctttggtcctttgggtcaattttgaccaagtcaatgctgattgg--atgtcacacgtgtaattacctatttt 49307955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25685017 - 25685091
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||| ||||||| | ||||||||    
T  25685017 ctaagatttagccccattgcaactttggtccttttgatcaattttgaccaagtcaacgctgatttggcatgccac 25685091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1290216 - 1290161
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  1290216 ctaagatttaacccctttgcatctttggtccttttggtcaattttgaccgagtcaa 1290161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5525442 - 5525516
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| |  |||||||||||||||||| ||||||| | ||||||||    
T  5525442 ctaagatttagccccattgcaactttggtccttttgaccaattttgaccaagtcaacgctgatttggcatgccac 5525516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10470629 - 10470691
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||| ||||||    
T  10470629 ctaagatttagccccattgcaactttggtccttttgatcaattttgaccaagtcaacgctgat 10470691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1835120 - 1835035
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||   ||||| ||| ||| | ||||||||| |||||||||    
T  1835120 ctaagatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaatta 1835035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 50909689 - 50909606
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||  |||||||   ||  ||||||| |||||||||||||    
T  50909689 taagatttagcccctttgcatctttggtccttttgatcaattttgacc-ggtcaatgtctatgtgacatgcaacgcgtgtaatta 50909606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13509377 - 13509322
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||    
T  13509377 ctaagatttagcccctttgcacctttgctccttttggccaattttgaccaagtcaa 13509322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 1289181 - 1289235
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||    
T  1289181 taagatttaacccccttgcatctttggtccttttggtcaattttgaccgagtcaa 1289235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10448278 - 10448221
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  10448278 ctaagatatagcccctttgcatctttggtccttttggccaattttgacc-agtcaatgc 10448221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13386550 - 13386476
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||| ||||||| ||||| |||||||||||| |  |||||||||||||||||| ||||||| | ||||||||    
T  13386550 ctaagatctagccccattgcaactttggtccttttgaccaattttgaccaagtcaacgctgatttggcatgccac 13386476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46638743 - 46638662
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgta 82  Q
    ||||||||||| ||||||||| |||| ||| ||| | ||||||||||| ||||||| ||||||| | |||| ||||||||||    
T  46638743 ctaagatttagtccctttgcaactttagtctttttgatcaattttgacaaagtcaacgctgatttggcatgtcacgcgtgta 46638662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10447090 - 10447147
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||||||||||||||||||||||||||| ||  |||||| ||| |||||||||    
T  10447090 ctaagatttagcccctttgcatctttggtccttttggctaattttaacc-agtcaatgc 10447147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10471406 - 10471344
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  10471406 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 10471344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13386099 - 13386161
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||| | ||||| |||||||||||| | |||||||||||| |||||| ||||||    
T  13386099 ctaagatttagcctcattgcaactttggtccttttgatcaattttgacctagtcaacgctgat 13386161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25685840 - 25685778
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  25685840 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 25685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 37728582 - 37728528
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||  ||||||||||||| ||||||  ||||||||||||||||||||    
T  37728582 taagatttagcttctttgcatctttgatccttttagtcaattttgaccaagtcaa 37728528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 1964421 - 1964374
Alignment:
Q  39 caattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||| ||||||| | ||||||||| |||||||||    
T  1964421 caattttgaccaagtcaacgctgatttggcatgccacgtgtgtaatta 1964374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19750593 - 19750538
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||| |||||  |||| |||||| ||||| |||||||||||||||    
T  19750593 ctaagatttagccccattgcaaatttgatccttttggtcacttttgaccaagtcaa 19750538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19789213 - 19789268
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||| |||||  |||| |||||| ||||| |||||||||||||||    
T  19789213 ctaagatttagccccattgcaaatttgatccttttggtcacttttgaccaagtcaa 19789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5526144 - 5526082
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| |||||  ||||||||||| |  ||||||||||| |||||| ||||||    
T  5526144 ctaagatttagccccattgcaattttggtccttttgaccaattttgacctagtcaacgctgat 5526082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 12129707 - 12129753
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  12129707 taagatttagcccatttgcatctttggtcattttgatcaattttgac 12129753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31599872 - 31599920
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||||||||| ||||| ||||||  | |||||||||||    
T  31599872 ctaagatttagcccctttgcaactttgatcctttttgccaattttgacc 31599920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 31601002 - 31600919
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    ||||||||||||| |||||| ||||| ||||||  |||||||||||||  ||||||||  ||  | ||||||||| |||||||||    
T  31601002 taagatttagcccatttgcaactttgatcctttttgtcaattttgacc-ggtcaatgcctatgtggcatgccacgtgtgtaatta 31600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22220471 - 22220556
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||| |||||||||    
T  22220471 ctaagatttagcccatttgcatctttggtccttttgatcaattttgagcaagtcaatgctgatttggcatgccacgtgtgtaatta 22220556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 2379941 - 2379857
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    ||||||||||| | |||||||||||||| |||| ||||||||||||||||||||| ||| ||| ||||||||| | |||||||||    
T  2379941 taagatttagctcatttgcatctttggttcttttggtcaattttgaccaagtcaacgcttatttgacatgccatgtgtgtaatta 2379857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30335722 - 30335777
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  30335722 ctaagatttagcccctttgcatctttggtccttttgttcaattttgaccaagtcaa 30335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30336519 - 30336461
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  30336519 ctaagatttagccattttgcatctttggtccttttggtcaattttgaccaagtcaatgc 30336461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24123916 - 24123868
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24123916 ctaagatttagcccctttgcatctttggtccttttggtcaattttgacc 24123868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10006427 - 10006474
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  10006427 ctaagatttagcccctttgcatctttggtccttttggtcaattttgac 10006474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43661348 - 43661403
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  43661348 ctaagatttagcccctttgcatctttggttcttttggtcaactttgaccaagtcaa 43661403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 2378944 - 2379028
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||| |||||  ||||||||||||||||||| | |||||||||||||| |||||||| ||| | |||| |||| |||||||||    
T  2378944 taagatctagcctatttgcatctttggtccttttgatcaattttgaccaaatcaatgcttatttggcatgtcacgtgtgtaatta 2379028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10007781 - 10007734
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  10007781 ctaagatttagcccctttgcatctttggtccttttcgtcaattttgac 10007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30568969 - 30569018
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacca 50  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  30568969 ctaagatttagcccctttgcatctttggtccttttggccaattgtgacca 30569018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30570274 - 30570225
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacca 50  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  30570274 ctaagatttagcccttttgcatctttggtccttttggccaattttgacca 30570225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24122965 - 24123013
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  24122965 ctaagatttagcttctttgcatctttggtccttttggtcaattttgacc 24123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1824096 - 1824049
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||    
T  1824096 ctaagatttagccattttgcatctttggtccttttggtcaattttgac 1824049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1858541 - 1858494
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||    
T  1858541 ctaagatttagccattttgcatctttggtccttttggtcaattttgac 1858494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5514064 - 5514111
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||    
T  5514064 ctaaaatttagcccctttgcatctttggtccttttgatcaattttgac 5514111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8389707 - 8389644
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    |||||||||| ||||||| ||| ||||||||||| |  |||||||||||||||||| |||||||    
T  8389707 ctaagatttaacccctttacatttttggtccttttgaacaattttgaccaagtcaaagctgatt 8389644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 11456696 - 11456739
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  11456696 gatttagccccattgcatctttggtccttttggtcaattttgac 11456739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43661841 - 43661786
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||| ||||  |||||||||||||||||| | |||||||||||||||||||    
T  43661841 ctaagatttcgcccaattgcatctttggtccttttgatcaattttgaccaagtcaa 43661786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 40471164 - 40471107
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||||| || ||||| |||||||||| ||| |||||||||||||| |||||||||    
T  40471164 taagatttaacctctttgtatctttggtcattttggtcaattttgaccgagtcaatgc 40471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32207342 - 32207302
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaat 42  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  32207342 taagatttagcctctttgcatctttggtccttttggtcaat 32207302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 40469424 - 40469475
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagt 53  Q
    |||||||||| ||||||| ||||||||| |||| | ||||||||||||||||    
T  40469424 taagatttagtccctttgtatctttggttcttttgatcaattttgaccaagt 40469475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 11289045 - 11289095
Alignment:
Q  12 cccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctga 62  Q
    ||||||||||  ||||| ||  |||||||||||||||||||||||||||||    
T  11289045 cccctttgcacttttggccccctaggtcaattttgaccaagtcaatgctga 11289095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 6041397 - 6041368
Alignment:
Q  34 taggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||||||||||||||||||    
T  6041397 taggtcaattttgaccaagtcaatgctgat 6041368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 6045034 - 6045005
Alignment:
Q  34 taggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||||||||||||||||||    
T  6045034 taggtcaattttgaccaagtcaatgctgat 6045005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22221382 - 22221297
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||| |||||||| ||||||  | ||||||||||   ||||| ||| ||| |  |||||||| |||||||||    
T  22221382 ctaagatttagcccctttacatctttgatccttttagccaattttgacttggtcaacgcttatttggtatgccacgtgtgtaatta 22221297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22227724 - 22227639
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||||||| |||||||| ||||||  | ||||||||||   ||||| ||| ||| |  |||||||| |||||||||    
T  22227724 ctaagatttagcccctttacatctttgatccttttagccaattttgacttggtcaacgcttatttggtatgccacgtgtgtaatta 22227639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24359890 - 24359975
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||  ||||||||||| |||  || |||||||||||||||| |||| ||| ||| | |||| || | |||||||||    
T  24359890 ctaagatttagcctatttgcatctttagtcactttggtcaattttgaccaaatcaacgcttatttggcatgtcatgtgtgtaatta 24359975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29043481 - 29043530
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacca 50  Q
    ||||||||||||||||||| ||||||| ||||||  | ||||||||||||    
T  29043481 ctaagatttagcccctttgtatctttgatccttttagacaattttgacca 29043530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 755986 - 756014
Alignment:
Q  34 taggtcaattttgaccaagtcaatgctga 62  Q
    |||||||||||||||||||||||||||||    
T  755986 taggtcaattttgaccaagtcaatgctga 756014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8388545 - 8388593
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||||||||||| | ||||||||||| |  |||||||||||    
T  8388545 ctaagatttagcccctttgcgtttttggtccttttgcccaattttgacc 8388593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48390 - 48474
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| |||||   ||||||||| |||||||||    
T  48390 ctaagatttattccctttgcatctttggtccttt-ggtcaattttgaccaagtcaatgttgatttagcatgccacgtgtgtaatta 48474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46721238 - 46721175
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||||||    
T  46721238 ctaagatttagcccctttgcatatttggtccttctggtcaattttgaccaagtcaacgctgatt 46721175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47615595 - 47615548
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  47615595 ctaagatttagcccctttgcatctttggtccttttggtcaattttgac 47615548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46720024 - 46720097
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||| ||||| ||| ||||||||    
T  46720024 ctaagatttagcccatttgcatatttggtccttttggtcaattttgatcaagtcaacgctgaatgg-catgccac 46720097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51470055 - 51470129
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||||| | ||||||||    
T  51470055 ctaagatttagccccattgcaactttggtccttttgatcaattttgacctagtcaacgctgatttggcatgccac 51470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 19984933 - 19984989
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  19984933 taagatttaacccctttgcatctttggtccttttggtcaattttgacc-agtcaatgc 19984989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7758485 - 7758540
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||    
T  7758485 ctaagatttaacccctttgtatctttggtccttttggtcaattttgacctagtcaa 7758540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23769939 - 23769994
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||| || | ||||||||||||||||||| |||||||||||||||||||||    
T  23769939 ctaagatttcgctcatttgcatctttggtccttttggtcaattttgaccaagtcaa 23769994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23770425 - 23770370
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||    
T  23770425 ctaagatttaacccctttgcatctttagtccttttggtcaactttgaccaagtcaa 23770370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19986088 - 19986031
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgc 59  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  19986088 ctaagatttaacccctttgcatctttggtcatttcggtcaattttgacc-agtcaatgc 19986031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 51470473 - 51470399
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    |||||||||||| || ||||| |||||||||||| | |||||||||||| |||||| ||||||| | ||||||||    
T  51470473 ctaagatttagctccattgcaactttggtccttttgatcaattttgacctagtcaacgctgatttggcatgccac 51470399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47609780 - 47609835
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||||||||||    
T  47609780 ctaagatttagccccattgcaactttggtccttttgaccaattttgaccaagtcaa 47609835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47610598 - 47610536
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  47610598 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 47610536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 534582 - 534667
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaatta 86  Q
    |||||||||||||  |||||||||||||||| || || |||||||||| ||||  | ||||||| | ||||||||  |||||||||    
T  534582 ctaagatttagcctatttgcatctttggtccatttggccaattttgactaagtgtacgctgatttggcatgccacatgtgtaatta 534667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52105685 - 52105592
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||| |||||||| |||| ||||||||||||||| || ||||||||||   ||||| ||||||| | |||||| |  ||||||||| |||||||    
T  52105685 ctaaaatttagcctctttacatctttggtccttttggccaattttgacttggtcaacgctgatttggcatgccgcatgtgtaattaactatttt 52105592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31645056 - 31645104
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||||| ||||||||||||||||||| |  |||||||||||    
T  31645056 ctaagatttagcccatttgcatctttggtccttttgaccaattttgacc 31645104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54540808 - 54540760
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||||||||| ||||| ||||||  |||||||||||||    
T  54540808 ctaagatttagcccctttgcaactttgatcctttttgtcaattttgacc 54540760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 12700260 - 12700303
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||| | |||||||||||||||||| |||||||||||||    
T  12700260 gatttagccacattgcatctttggtccttttggtcaattttgac 12700303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 40426792 - 40426741
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaa 56  Q
    |||||||| ||||||  ||||||||||||| ||| |||||||||||||||||    
T  40426792 gatttagctcctttgtgtctttggtccttttggttaattttgaccaagtcaa 40426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47614268 - 47614315
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||| ||||||||||||||| |||| ||| |||||||||    
T  47614268 ctaagatttagcctctttgcatctttggtgcttttggttaattttgac 47614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 8240633 - 8240683
Alignment:
Q  12 cccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctga 62  Q
    ||||||||||  ||||| ||  |||||||||||||||||||||||||||||    
T  8240633 cccctttgcacttttggccccctaggtcaattttgaccaagtcaatgctga 8240683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34019163 - 34019117
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttga 47  Q
    |||| ||||||| | ||||||||||||||||||| ||||||||||||    
T  34019163 ctaaaatttagctcatttgcatctttggtccttttggtcaattttga 34019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54987025 - 54986977
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||| |||||||||||||| || ||| || |||||||||||    
T  54987025 ctaagatttagctcctttgcatctttgatcattttggccaattttgacc 54986977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 596439 - 596487
Alignment:
Q  317 tcatttcatttcattgtttttctcacatgttcctcttgcttatacctct 365  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  596439 tcatttcatttcattgtttttctcacatgttcttcttgcttatacctct 596487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 597299 - 597211
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgtaattacctatttt 94  Q
    |||||| || |||||||| |||||| ||| | |||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||    
T  597299 atttagtccatttgcatccttggtcattttgatcaattttaaccgagtcaattctgattggacatgacacgcgtgtaattatctatttt 597211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14999173 - 14999125
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14999173 ctaagatttagcccctttgcatctttgttcctttaggtcaattttgacc 14999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22629569 - 22629616
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  22629569 ctaagatttagcccctttgcatctttggtccttttggtcaattttgac 22629616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3227612 - 3227538
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||||| | ||||||||    
T  3227612 ctaagatttagccccattgcaactttggtccttttgatcaattttgacctagtcaacgctgatttggcatgccac 3227538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31949405 - 31949479
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||||| | ||||||||    
T  31949405 ctaagatttagccccattgcaactttggtccttttgatcaattttgacctagtcaacgctgatttggcatgccac 31949479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31949820 - 31949746
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||||| | ||||||||    
T  31949820 ctaagatttagccccattgcaactttggtccttttgatcaattttgacctagtcaacgctgatttggcatgccac 31949746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14998063 - 14998107
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaatttt 45  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  14998063 ctaagatttagcccctttgcatctttggtccttttggtcaatttt 14998107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7500537 - 7500584
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||    
T  7500537 ctaagatttagcccctttgcatctttgatccttttggtcaattttgac 7500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18372475 - 18372428
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  18372475 ctaagatttagcccctttgtatctttggtccttttggtcaattttgac 18372428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 7501869 - 7501823
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||    
T  7501869 taagatgtagcccctttgcatctttggtccttttggtcaattttgac 7501823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17781744 - 17781818
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||| ||||| |||||||||||| |  |||||||||||||||||| || |||| | ||||||||    
T  17781744 ctaagatttagccccattgcaactttggtccttttgaccaattttgaccaagtcaacgccgatttggcatgccac 17781818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 3227191 - 3227264
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    |||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||| | ||||||||    
T  3227191 taagatttagccccattgcaactttggtccttttgaacaattttgacctagtcaacgctgatttggcatgccac 3227264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 21505498 - 21505542
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttg 46  Q
    ||||||||||||||||||||||||||||||||| || ||||||||    
T  21505498 taagatttagcccctttgcatctttggtccttttggacaattttg 21505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 127418 - 127492
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    ||||||||||||||  ||||| |||||||||||| |  ||||||||||| |||||| ||||||| | ||||||||    
T  127418 ctaagatttagcccaattgcaactttggtccttttgaccaattttgacctagtcaacgctgatttggcatgccac 127492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47525385 - 47525323
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  47525385 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 47525323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 770779 - 770731
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||| |||||||||||||||||||||| || ||| ||||||||||||||    
T  770779 ctaaaatttagcccctttgcatctttgatcattttggtcaattttgacc 770731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32253445 - 32253397
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    ||||||||||| |||||||||||||||||||||| ||  ||||||||||    
T  32253445 ctaagatttagtccctttgcatctttggtccttttggcaaattttgacc 32253397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42886304 - 42886256
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||||| |||||||||||| || ||| ||||||||||||||    
T  42886304 ctaagatttagcccatttgcatctttgatcattttggtcaattttgacc 42886256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18371507 - 18371554
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||| | |||||||||||| |||||| |||||||||||||    
T  18371507 ctaagatttagcacatttgcatctttgatccttttggtcaattttgac 18371554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22630470 - 22630423
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||| |||| ||||| |||||||||||||| |||||||||||||    
T  22630470 ctaagattcagcctctttgtatctttggtccttttggtcaattttgac 22630423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 327387 - 327349
Alignment:
Q  24 tttggtcctttaggtcaattttgaccaagtcaatgctga 62  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  327387 tttggccccttaggtcaattttgaccaagtcaatgctga 327349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 47369865 - 47369911
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  47369865 taagatttagcccctttgcatctttagttattttggtcaattttgac 47369911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30439376 - 30439303
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgcca 74  Q
    ||||||||||||||||||||| ||| |||| ||| | |||||||||||  ||||||  |||| | |||||||||    
T  30439376 ctaagatttagcccctttgcaccttcggtcattttgctcaattttgacttagtcaacactgacttgacatgcca 30439303  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 49451 - 49378
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgcca 74  Q
    |||||||||||| |||||||| |||||||||||| || ||||||||||||| |||| ||||||| | |||||||    
T  49451 ctaagatttagctcctttgcaactttggtccttttggccaattttgaccaaatcaacgctgatttggcatgcca 49378  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27437911 - 27437984
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgcca 74  Q
    |||||||||||| |||||||| |||||||||||| || ||||||||||||| |||| ||||||| | |||||||    
T  27437911 ctaagatttagctcctttgcaactttggtccttttggccaattttgaccaaatcaacgctgatttggcatgcca 27437984  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34834597 - 34834516
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccacgcgtgta 82  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||| | |||||||| ||||||    
T  34834597 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgatttggcatgccacacgtgta 34834516  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1829621 - 1829573
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgacc 49  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  1829621 ctaagatttagcccctttgcatctttggtcattttggtcaattttgacc 1829573  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7314962 - 7315009
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7314962 ctaagatttagcccctttgcatctttggtcattttggtcaattttgac 7315009  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 7316311 - 7316265
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  7316311 taagatttagcccctttgcatctatggtccttttggtcaattttgac 7316265  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 3722536 - 3722467
Alignment:
Q  6 atttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgattggacatgccac 75  Q
    |||||||||| ||||| |||||||||||| |  |||||||||||||||||| ||||||| | ||||||||    
T  3722536 atttagccccattgcaactttggtccttttgaccaattttgaccaagtcaacgctgatttggcatgccac 3722467  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8659348 - 8659410
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  8659348 ctaagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 8659410  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 26717130 - 26717072
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgct 60  Q
    ||||||||||| | |||||| ||||| |||||| | |||||||||||||||||||||||    
T  26717130 taagatttagctcttttgcaactttgatccttttgatcaattttgaccaagtcaatgct 26717072  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 3721696 - 3721757
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgat 63  Q
    |||||||||||||| ||||| |||||||||||| |  ||||||||||| |||||| ||||||    
T  3721696 taagatttagccccattgcaactttggtccttttgaccaattttgacctagtcaacgctgat 3721757  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 5658840 - 5658889
Alignment:
Q  2 taagatttagcccctttgcatctttggtcctttaggtcaattttgaccaa 51  Q
    ||||||||||||| |||||| ||||| |||||| ||||||||||||||||    
T  5658840 taagatttagcccatttgcaactttgatccttttggtcaattttgaccaa 5658889  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 6842286 - 6842238
Alignment:
Q  16 tttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    |||||||||||| |||||| || |||||||||||||||||| |||||||    
T  6842286 tttgcatctttgatccttttggccaattttgaccaagtcaaagctgatt 6842238  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8660222 - 8660159
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctgatt 64  Q
    |||||||||||| || ||||| ||||| |||||| |  |||||||||||||||||| |||||||    
T  8660222 ctaagatttagctccattgcaactttgatccttttgaccaattttgaccaagtcaacgctgatt 8660159  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17496881 - 17496928
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||| || |||||||||||||||||||| | |||||||||||    
T  17496881 ctaagatttaacctctttgcatctttggtccttttgatcaattttgac 17496928  T

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Target: scaffold0320 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19571 - 19618
Alignment:
Q  1 ctaagatttagcccctttgcatctttggtcctttaggtcaattttgac 48  Q
    |||||||||| |||||||||||||||| || ||| |||||||||||||    
T  19571 ctaagatttaacccctttgcatctttgatcattttggtcaattttgac 19618  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 27900 - 27850
Alignment:
Q  12 cccctttgcatctttggtcctttaggtcaattttgaccaagtcaatgctga 62  Q
    ||||||||||  ||||| ||  |||||||||||||||||||||||||||||    
T  27900 cccctttgcacttttggccccctaggtcaattttgaccaagtcaatgctga 27850  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 7933 - 7880
Alignment:
Q  5 gatttagcccctttgcatctttggtcctttaggtcaattttgaccaagtcaatg 58  Q
    ||||||||||||||||| ||||| |||||| || ||||||||||  ||||||||    
T  7933 gatttagcccctttgcaactttgatccttttggccaattttgacttagtcaatg 7880  T

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