View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_low_7 (Length: 296)
Name: NF1937_low_7
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 25089584 - 25089861
Alignment:
| Q |
1 |
tatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccagaaggccacttggaacatgcttgttcatcccc |
100 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25089584 |
tatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggccacttggaacatgcttgttcatcccc |
25089683 |
T |
|
| Q |
101 |
taacattgaaacacagctccttctatgtcttcgtcctccatccgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtc |
200 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25089684 |
taacattgaaacagagctccttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtc |
25089783 |
T |
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| Q |
201 |
tttgcgaaactgctccttactccggtaacaactgatggtggtgtccaaatacaagaatcagctcctcctgactttccc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
25089784 |
tttgcgaaactgctccttactccggtaacaactgatggtagtgtccaaatccaagaaccagctcctcctgactttccc |
25089861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 25147554 - 25147831
Alignment:
| Q |
1 |
tatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccagaaggccacttggaacatgcttgttcatcccc |
100 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25147554 |
tatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggccacttggaacatgcttgttcatcccc |
25147653 |
T |
|
| Q |
101 |
taacattgaaacacagctccttctatgtcttcgtcctccatccgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtc |
200 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25147654 |
taacattgaaacagagctccttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtc |
25147753 |
T |
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| Q |
201 |
tttgcgaaactgctccttactccggtaacaactgatggtggtgtccaaatacaagaatcagctcctcctgactttccc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
25147754 |
tttgcgaaactgctccttactccggtaacaactgatggtagtgtccaaatccaagaaccagctcctcctgactttccc |
25147831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25728460 - 25728359
Alignment:
| Q |
1 |
tatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccagaaggccacttggaacatgcttgttcatcccc |
100 |
Q |
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|
||||||| ||||||||||| || | ||||||||||| |||||| ||| ||||| |||||||||||| ||| || |||||||||| ||||| ||||| |
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| T |
25728460 |
tatggcagatatgcgccggccccgacgtcaagattccaaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttcccc |
25728361 |
T |
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| Q |
101 |
ta |
102 |
Q |
| |
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|| |
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| T |
25728360 |
ta |
25728359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 25224814 - 25224889
Alignment:
| Q |
27 |
gtcaagattccgaagattggctcaaaagtctactacttcccagaaggccacttggaacatgcttgttcatccccta |
102 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||| ||| || |||||||||| ||||| ||||||| |
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| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttccccta |
25224889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 25288970 - 25289045
Alignment:
| Q |
27 |
gtcaagattccgaagattggctcaaaagtctactacttcccagaaggccacttggaacatgcttgttcatccccta |
102 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||| ||| || |||||||||| ||||| ||||||| |
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| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttccccta |
25289045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 26099327 - 26099248
Alignment:
| Q |
149 |
ctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaa |
228 |
Q |
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||||||||||||| | |||||||| || | ||| |||||| |||||||||||||| ||||||||||| ||||| |||| |
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| T |
26099327 |
ctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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