View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937_low_8 (Length: 287)

Name: NF1937_low_8
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937_low_8
NF1937_low_8
[»] chr4 (14 HSPs)
chr4 (17-69)||(31599840-31599892)
chr4 (14-69)||(10448255-10448310)
chr4 (14-70)||(8155787-8155843)
chr4 (25-69)||(35935539-35935583)
chr4 (6-56)||(13509346-13509396)
chr4 (14-66)||(1290193-1290245)
chr4 (17-69)||(8757725-8757777)
chr4 (14-69)||(1835097-1835152)
chr4 (20-70)||(17388212-17388262)
chr4 (16-56)||(3927730-3927770)
chr4 (17-69)||(8758835-8758887)
chr4 (17-69)||(19750573-19750625)
chr4 (17-69)||(19789181-19789233)
chr4 (17-69)||(31600983-31601035)
[»] chr6 (8 HSPs)
chr6 (178-229)||(28899113-28899164)
chr6 (14-69)||(1829598-1829653)
chr6 (17-69)||(16704495-16704547)
chr6 (17-69)||(10784644-10784696)
chr6 (14-69)||(26949180-26949235)
chr6 (17-69)||(3333024-3333076)
chr6 (17-69)||(10785911-10785963)
chr6 (17-65)||(26575052-26575100)
[»] chr7 (11 HSPs)
chr7 (14-67)||(22629539-22629592)
chr7 (14-69)||(18372452-18372507)
chr7 (17-69)||(31659674-31659726)
chr7 (14-69)||(14999150-14999205)
chr7 (14-66)||(7500508-7500560)
chr7 (14-65)||(18371479-18371530)
chr7 (17-56)||(30439356-30439395)
chr7 (14-69)||(42886281-42886336)
chr7 (14-65)||(47369836-47369887)
chr7 (14-52)||(14998048-14998086)
chr7 (28-70)||(34352795-34352837)
[»] chr5 (16 HSPs)
chr5 (14-70)||(16650042-16650098)
chr5 (17-69)||(36486486-36486538)
chr5 (14-69)||(25523120-25523175)
chr5 (14-69)||(42195183-42195238)
chr5 (17-66)||(28539818-28539867)
chr5 (14-69)||(18486897-18486952)
chr5 (14-69)||(19752962-19753017)
chr5 (14-67)||(25524093-25524146)
chr5 (14-62)||(24332971-24333019)
chr5 (14-70)||(25055462-25055518)
chr5 (17-65)||(28538731-28538779)
chr5 (17-56)||(1797295-1797334)
chr5 (14-69)||(19754125-19754180)
chr5 (17-69)||(21835091-21835143)
chr5 (17-69)||(40255670-40255722)
chr5 (14-62)||(42196195-42196243)
[»] chr8 (22 HSPs)
chr8 (14-69)||(10007758-10007813)
chr8 (14-70)||(1824073-1824129)
chr8 (14-70)||(1858518-1858574)
chr8 (17-69)||(18978070-18978122)
chr8 (17-69)||(29968335-29968387)
chr8 (14-69)||(5514032-5514087)
chr8 (16-66)||(1823606-1823656)
chr8 (16-66)||(1858051-1858101)
chr8 (14-70)||(18488257-18488313)
chr8 (14-62)||(30568944-30568992)
chr8 (14-62)||(43661323-43661371)
chr8 (18-69)||(8388513-8388564)
chr8 (14-69)||(10006395-10006450)
chr8 (14-69)||(22220439-22220494)
chr8 (14-69)||(24122933-24122988)
chr8 (14-69)||(29043449-29043504)
chr8 (14-68)||(32207320-32207374)
chr8 (14-67)||(30336496-30336549)
chr8 (17-66)||(45112923-45112972)
chr8 (25-69)||(12351972-12352016)
chr8 (17-69)||(12353359-12353410)
chr8 (14-66)||(30335693-30335745)
[»] chr1 (19 HSPs)
chr1 (14-69)||(43058836-43058891)
chr1 (16-68)||(23980463-23980515)
chr1 (17-69)||(24422851-24422903)
chr1 (17-69)||(24426073-24426125)
chr1 (17-69)||(39699765-39699817)
chr1 (14-69)||(51684417-51684472)
chr1 (17-69)||(36613902-36613954)
chr1 (14-62)||(39153111-39153159)
chr1 (14-62)||(51685760-51685808)
chr1 (25-69)||(52275019-52275063)
chr1 (14-69)||(45157204-45157259)
chr1 (14-69)||(50680382-50680437)
chr1 (14-67)||(40384778-40384831)
chr1 (17-70)||(44411964-44412017)
chr1 (14-70)||(11437194-11437250)
chr1 (17-65)||(33088615-33088663)
chr1 (17-69)||(35067000-35067052)
chr1 (14-70)||(43378708-43378764)
chr1 (17-69)||(52276161-52276213)
[»] chr3 (19 HSPs)
chr3 (16-69)||(46721217-46721270)
chr3 (17-65)||(54540788-54540836)
chr3 (14-69)||(12703495-12703550)
chr3 (16-69)||(22776809-22776862)
chr3 (16-69)||(46719992-46720045)
chr3 (25-69)||(7267694-7267738)
chr3 (17-69)||(29931277-29931329)
chr3 (17-69)||(29980431-29980483)
chr3 (14-69)||(7758453-7758508)
chr3 (14-69)||(19984900-19984955)
chr3 (14-56)||(19986065-19986107)
chr3 (14-67)||(534552-534605)
chr3 (25-70)||(8456527-8456572)
chr3 (14-62)||(23770402-23770450)
chr3 (17-69)||(29932697-29932749)
chr3 (17-69)||(29981851-29981903)
chr3 (14-50)||(47615572-47615608)
chr3 (17-69)||(54539806-54539858)
chr3 (14-70)||(54987002-54987058)
[»] chr2 (13 HSPs)
chr2 (17-69)||(11258809-11258861)
chr2 (14-69)||(22587949-22588004)
chr2 (17-70)||(22848241-22848294)
chr2 (17-69)||(38839293-38839345)
chr2 (17-69)||(38840491-38840543)
chr2 (17-69)||(41878145-41878197)
chr2 (23-70)||(7899886-7899933)
chr2 (14-69)||(11996758-11996813)
chr2 (14-65)||(18904422-18904473)
chr2 (14-61)||(22587559-22587606)
chr2 (14-69)||(23869530-23869585)
chr2 (17-67)||(7898744-7898794)
chr2 (14-67)||(18299426-18299479)
[»] scaffold0320 (1 HSPs)
scaffold0320 (14-69)||(19539-19594)
[»] scaffold2034 (1 HSPs)
scaffold2034 (16-70)||(283-337)
[»] scaffold0632 (1 HSPs)
scaffold0632 (17-62)||(3306-3351)
[»] scaffold0049 (1 HSPs)
scaffold0049 (17-69)||(7413-7465)
[»] scaffold0045 (1 HSPs)
scaffold0045 (14-69)||(48358-48413)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-69)||(61454-61509)
[»] scaffold0302 (1 HSPs)
scaffold0302 (17-69)||(17521-17573)


Alignment Details
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 31599892 - 31599840
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  31599892 tgcaaaggggctaaatcttaggggaccaaaattgtagtttttgtacttagggg 31599840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 10448255 - 10448310
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||    
T  10448255 agatgcaaaggggctatatcttagagggccaaaattgtagtttttgtacatagggg 10448310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 8155843 - 8155787
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    |||||||||| ||||||||||||| || ||||||||||||||| || ||||||||||    
T  8155843 agatgcaaagcggctaaatcttagggggccaaaattgtagtttttgaacttagggga 8155787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 35935539 - 35935583
Alignment:
Q  25 ggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  35935539 ggctaaatcttagggggccaaaattgtagtttatgtacttagggg 35935583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 13509346 - 13509396
Alignment:
Q  6 aggagcagagatgcaaaggggctaaatcttagaggaccaaaattgtagttt 56  Q
    ||||||| || ||||||||||||||||||||| ||| ||||||||||||||    
T  13509346 aggagcaaaggtgcaaaggggctaaatcttaggggatcaaaattgtagttt 13509396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 1290193 - 1290245
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    ||||||||||||| |||||||||| || | ||||||||||||| |||||||||    
T  1290193 agatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtacttag 1290245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8757777 - 8757725
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||  || ||||||||||||||| ||||||||||||    
T  8757777 tgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggg 8757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 1835097 - 1835152
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| ||  ||||||||||||||   ||||||||||    
T  1835097 agatgcaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggg 1835152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17388212 - 17388262
Alignment:
Q  20 aaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||| |||| | || |||||||||||||||||||||||| ||||    
T  17388212 aaaggggctaattcttggggggccaaaattgtagtttatgtacttaaggga 17388262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 3927770 - 3927730
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagttt 56  Q
    ||||||| |||||||| | ||||||||||||||||||||||    
T  3927770 atgcaaatgggctaaaacatagaggaccaaaattgtagttt 3927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 8758835 - 8758887
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| || |||||||||||  || ||||||||||||||| ||||||||||||    
T  8758835 tgcaatggagctaaatcttaaggggccaaaattgtagtttctgtacttagggg 8758887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 19750573 - 19750625
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| ||   ||||||||||||| ||||||||||||    
T  19750573 tgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggg 19750625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 19789233 - 19789181
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| ||   ||||||||||||| ||||||||||||    
T  19789233 tgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggg 19789181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31600983 - 31601035
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||| |||||||||||||  ||  |||||||||||||| ||||||||||||    
T  31600983 tgcaaatgggctaaatcttaaggggtcaaaattgtagtttttgtacttagggg 31601035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 28899164 - 28899113
Alignment:
Q  178 tgcgttaaccactaaatttgtttttatctaatgttatttgtttaccaaaact 229  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  28899164 tgcgttaaccactaaatttgtttttatctattattatttgtttaccaaaact 28899113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 1829598 - 1829653
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||    
T  1829598 agatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggg 1829653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 16704495 - 16704547
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||| |||||||||||| |||| |||||||||||||| ||||||||||||    
T  16704495 tgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggg 16704547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 10784696 - 10784644
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||| | || ||||||||||||||| | ||||||||||    
T  10784696 tgcaaaggggctaaatctttgggggccaaaattgtagtttttatacttagggg 10784644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 26949180 - 26949235
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| ||||||||||| ||  ||||||||||||| | ||||||||||    
T  26949180 agatgcaaaggggttaaatcttagaagattaaaattgtagtttttatacttagggg 26949235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3333024 - 3333076
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||| |||||||   ||||||||||||| ||||| ||||||    
T  3333024 tgcaaaggggctaaattttagagggttaaaattgtagtttttgtacatagggg 3333076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10785911 - 10785963
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||||  ||   ||||||||||||| ||||||||||||    
T  10785911 tgcaaaggggctaaatcttaaggggttaaaattgtagtttttgtacttagggg 10785963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 26575052 - 26575100
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    |||||||| | |||||||||| || ||||||||||||||| ||||||||    
T  26575052 tgcaaaggagttaaatcttagggggccaaaattgtagtttttgtactta 26575100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 22629592 - 22629539
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  22629592 agatgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttagg 22629539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 18372452 - 18372507
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||    
T  18372452 agatacaaaggggctaaatcttagggggccaaaattgtagtttttgtacttagggg 18372507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 31659726 - 31659674
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || ||||||||||||||| ||||||||||||    
T  31659726 tgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggg 31659674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 14999150 - 14999205
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| |  ||||||||||||||| |||| |||||||    
T  14999150 agatgcaaaggggctaaatcttagggcgccaaaattgtagtttttgtatttagggg 14999205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 7500560 - 7500508
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    |||||||||||||||||||||||| || |||||||||| |||| | |||||||    
T  7500560 agatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttag 7500508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 18371530 - 18371479
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    ||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  18371530 agatgcaaatgtgctaaatcttagggggccaaaattgtagtttttgtactta 18371479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 30439356 - 30439395
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagttt 56  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  30439356 tgcaaaggggctaaatcttaggggactaaaattgtagttt 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 42886281 - 42886336
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| |||||||||||||| || | ||||||||||||| |||| |||||||    
T  42886281 agatgcaaatgggctaaatcttagggggctaaaattgtagtttttgtatttagggg 42886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 47369887 - 47369836
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    |||||||||||||||||||||||  || |||||||| |||||| ||||||||    
T  47369887 agatgcaaaggggctaaatcttaaggggccaaaattatagtttttgtactta 47369836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 14998086 - 14998048
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgta 52  Q
    |||||||||||||||||||||||| || |||||||||||    
T  14998086 agatgcaaaggggctaaatcttagggggccaaaattgta 14998048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 34352795 - 34352837
Alignment:
Q  28 taaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  34352795 taaatcttagagggccaaaattatagtttatgtacttaaggga 34352837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 16650098 - 16650042
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||    
T  16650098 agatgcaaaggggttaaatcttagagggtcaaaattgtagtttttgtacttagggga 16650042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 36486486 - 36486538
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  36486486 tgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagggg 36486538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 25523175 - 25523120
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| ||  |||||||||||||| ||||||||||||    
T  25523175 agatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacttagggg 25523120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 42195238 - 42195183
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||    
T  42195238 agatgcaaaggggctaaatcttaggggaccaaaattgtagattttgtacatagggg 42195183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 28539818 - 28539867
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  28539818 tgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttag 28539867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 18486897 - 18486952
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| || |||||||||| |||| | ||||||||||    
T  18486897 agatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttagggg 18486952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19753017 - 19752962
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| ||||||||||||    
T  19753017 agatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggg 19752962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 25524093 - 25524146
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    |||||||||||||||||||||||| ||  ||||||| |||||| ||||||||||    
T  25524093 agatgcaaaggggctaaatcttagggggtcaaaattatagtttttgtacttagg 25524146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 24333019 - 24332971
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    ||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  24333019 agatgcaaaggggttaaatcttagagggtcaaaattgtagtttttgtac 24332971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25055518 - 25055462
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||| |||||||||||||| || ||||||||||||||| | ||| |||||||    
T  25055518 agatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacatagggga 25055462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 28538779 - 28538731
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    ||||||||||||||||||||| || | ||||||||||||| ||||||||    
T  28538779 tgcaaaggggctaaatcttagggggctaaaattgtagtttttgtactta 28538731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 1797295 - 1797334
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagttt 56  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  1797295 tgcaaaggggctaaatcttaagggaccaaaattgtagttt 1797334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 19754125 - 19754180
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| |||| |||||||    
T  19754125 agatgcaatggggctaaatcatagggggccaaaattgtagtttttgtatttagggg 19754180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21835143 - 21835091
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||    
T  21835143 tgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggg 21835091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 40255670 - 40255722
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| |||| |||||||||| || ||||||||||||||| |||| |||||||    
T  40255670 tgcaatggggttaaatcttagggggccaaaattgtagtttctgtatttagggg 40255722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 42196195 - 42196243
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    ||||||||| |||||||||||||| |||| |||| |||||||| |||||    
T  42196195 agatgcaaatgggctaaatcttaggggactaaaaatgtagtttttgtac 42196243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 10007758 - 10007813
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||    
T  10007758 agatgcaaaggggctaaatcttaggggaccaaaattgtggtttctatacttagggg 10007813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1824073 - 1824129
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    |||||||||  ||||||||||||| || ||||||||||||||| |||||||||||||    
T  1824073 agatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttagggga 1824129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1858518 - 1858574
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    |||||||||  ||||||||||||| || ||||||||||||||| |||||||||||||    
T  1858518 agatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttagggga 1858574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 18978122 - 18978070
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||||  || ||||||||||||||| ||||||||||||    
T  18978122 tgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacttagggg 18978070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29968335 - 29968387
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  29968335 tgcaatggggctaaatcttaggggaccagaattgtagtttttgtacttagggg 29968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 5514087 - 5514032
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||| |||| ||  |||||||||||||| ||||||||||||    
T  5514087 agatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggg 5514032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1823656 - 1823606
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    ||||||| |||||||||||||| ||||| |||||||||||| |||||||||    
T  1823656 atgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttag 1823606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1858101 - 1858051
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    ||||||| |||||||||||||| ||||| |||||||||||| |||||||||    
T  1858101 atgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttag 1858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18488257 - 18488313
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||| || |||||||||| ||||||||||||||| ||||  |||||||    
T  18488257 agatgcaaaggggttatatcttagagggccaaaattgtagtttttgtatatagggga 18488313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 30568992 - 30568944
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||    
T  30568992 agatgcaaaggggctaaatcttaggggatcaaaattatagtttttgtac 30568944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 43661371 - 43661323
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    |||||||||||||||||||||||| || |||||||| |||||| |||||    
T  43661371 agatgcaaaggggctaaatcttagggggccaaaattatagtttttgtac 43661323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 8388564 - 8388513
Alignment:
Q  18 gcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||| || |||||||| |||||| ||||| ||||||    
T  8388564 gcaaaggggctaaatcttagggggccaaaattatagtttttgtacatagggg 8388513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 10006450 - 10006395
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| || |||||||||| ||||   ||||||||||    
T  10006450 agatgcaaaggggctaaatcttagggggccaaaattgttgttttgatacttagggg 10006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 22220494 - 22220439
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| |||||||||||||| || ||||||||||||||| | ||| ||||||    
T  22220494 agatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacatagggg 22220439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 24122988 - 24122933
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||  |||||||||||| |||| |||||| |||||| ||||||||||||    
T  24122988 agatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggg 24122933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 29043504 - 29043449
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||| ||||||||||||||||||||||   ||||||||||||| ||||| ||||||    
T  29043504 agatacaaaggggctaaatcttagagggaaaaaattgtagtttttgtacatagggg 29043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 32207320 - 32207374
Alignment:
Q  14 agatgcaaaggggctaaatctt-agaggaccaaaattgtagtttatgtacttaggg 68  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||    
T  32207320 agatgcaaagaggctaaatcttaagagg-ccaaaattgtagtttttgtacttaggg 32207374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 30336496 - 30336549
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    |||||||||  ||||||||||||||||   ||||||||||||| ||||||||||    
T  30336496 agatgcaaaatggctaaatcttagagggttaaaattgtagtttttgtacttagg 30336549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 45112972 - 45112923
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    |||||||||||||| |||||| ||||||||||| || ||| |||||||||    
T  45112972 tgcaaaggggctaattcttaggggaccaaaattataatttttgtacttag 45112923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 12352016 - 12351972
Alignment:
Q  25 ggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| ||  |||||||||||||| ||||||||||||    
T  12352016 ggctaaatcttagggggtcaaaattgtagtttttgtacttagggg 12351972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 12353359 - 12353410
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || |||||||| |||||| ||||||||||||    
T  12353359 tgcaatggggctaaatcttagggggccaaaattatagttt-tgtacttagggg 12353410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 30335745 - 30335693
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttag 66  Q
    |||||||||||||||||||||||| ||   ||||||||| ||| |||||||||    
T  30335745 agatgcaaaggggctaaatcttagggggttaaaattgtaatttttgtacttag 30335693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 43058891 - 43058836
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  43058891 agatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggg 43058836  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23980463 - 23980515
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttaggg 68  Q
    ||||||||||||||||||||||  |||||||||| |||||| |||||||||||    
T  23980463 atgcaaaggggctaaatcttaggagaccaaaattatagtttttgtacttaggg 23980515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 24422903 - 24422851
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || ||||||||||||||| ||||||||||||    
T  24422903 tgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggg 24422851  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 24426073 - 24426125
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  24426073 tgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggg 24426125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 39699765 - 39699817
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || ||||||||||||||| ||||||||||||    
T  39699765 tgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggg 39699817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 51684472 - 51684417
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||| ||||||    
T  51684472 agatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggg 51684417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 36613902 - 36613954
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||| ||||||||||||| ||  |||||||||||||| ||||||||||||    
T  36613902 tgcaaagaggctaaatcttagggggtcaaaattgtagtttttgtacttagggg 36613954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 39153111 - 39153159
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    ||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  39153111 agatgcaaaggggttaaatcttagagggtcaaaattgtagtttttgtac 39153159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 51685760 - 51685808
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    |||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  51685760 agatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtac 51685808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 52275063 - 52275019
Alignment:
Q  25 ggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||    
T  52275063 ggctaaatcttaggggcccaaaattgtagtttttgtacttagggg 52275019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 45157204 - 45157259
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||    
T  45157204 agatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggg 45157259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 50680437 - 50680382
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| |||||||||| |||| |||||| |||||| | ||||||||||    
T  50680437 agatgcaaaggggttaaatcttaggggactaaaattatagtttttatacttagggg 50680382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 40384831 - 40384778
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    |||||||||| |||||||| |||| ||| |||||||||||||| ||||| ||||    
T  40384831 agatgcaaagaggctaaattttaggggatcaaaattgtagtttttgtacatagg 40384778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 44411964 - 44412017
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||| |||||||||| |||   ||||||||||||| |||||||||||||    
T  44411964 tgcaaagggcctaaatcttaaaggggtaaaattgtagtttttgtacttagggga 44412017  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 11437194 - 11437250
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||| ||| ||| |||||||||| || ||||||||||||||| |||||||| ||||    
T  11437194 agatgtaaaagggttaaatcttagggggccaaaattgtagtttttgtacttaaggga 11437250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33088615 - 33088663
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    ||||||||||||||||||||| |   |||||||||||||| ||||||||    
T  33088615 tgcaaaggggctaaatcttagggaggcaaaattgtagtttttgtactta 33088663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 35067000 - 35067052
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||| |||| || ||||||||||||||| ||| | ||||||    
T  35067000 tgcaaaggggctaaatattagggggccaaaattgtagtttttgttcatagggg 35067052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 43378708 - 43378764
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||| ||||||||||||  |  |||||||||| ||| |||||||||||||    
T  43378708 agatgcaaaggtgctaaatcttaggtggtcaaaattgtaatttttgtacttagggga 43378764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 52276161 - 52276213
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| |||| ||| || |||||| ||||||||||||    
T  52276161 tgcaatggggctaaatcttaggggactaaatttatagtttttgtacttagggg 52276213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 46721217 - 46721270
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||    
T  46721217 atgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggg 46721270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 54540788 - 54540836
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  54540788 tgcaaaggggctaaatcttagggggccaaaattgtagtttttgtactta 54540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 12703495 - 12703550
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| ||||||||||||    
T  12703495 agatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggg 12703550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 22776809 - 22776862
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||| |||||| || ||||||||||||||| ||||| ||||||    
T  22776809 atgcaaaggggctaattcttagggggccaaaattgtagtttttgtacatagggg 22776862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 46720045 - 46719992
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||| ||||||||||||||||||| ||||||||||||| | ||| ||||||    
T  46720045 atgcaaatgggctaaatcttagaggactaaaattgtagtttttatacatagggg 46719992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 7267738 - 7267694
Alignment:
Q  25 ggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||    
T  7267738 ggctaaatcttagggggccaaaattgtagtttctgtacttagggg 7267694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 29931329 - 29931277
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||| |||||||||| || ||||||||||||||| |||| |||||||    
T  29931329 tgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggg 29931277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 29980483 - 29980431
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||| |||||||||| || ||||||||||||||| |||| |||||||    
T  29980483 tgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggg 29980431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 7758508 - 7758453
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||| |||||||| |||||||||| || | ||||||||||||| ||||||||||||    
T  7758508 agatacaaaggggttaaatcttagggggcaaaaattgtagtttttgtacttagggg 7758453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19984955 - 19984900
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||    
T  19984955 agatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggg 19984900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 19986065 - 19986107
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagttt 56  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  19986065 agatgcaaaggggttaaatcttagagggtcaaaattgtagttt 19986107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 534605 - 534552
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    |||||||||  ||||||||||||| || ||||||||||||||| ||||| ||||    
T  534605 agatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacatagg 534552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 8456572 - 8456527
Alignment:
Q  25 ggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||| || ||||||||||||||| |||| ||||||||    
T  8456572 ggctaaatcttagggggccaaaattgtagtttttgtatttagggga 8456527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 23770402 - 23770450
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    ||||||||||||| |||||||||| || | ||||||||||||| |||||    
T  23770402 agatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtac 23770450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29932697 - 29932749
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| ||||||||||  ||  |||||||||||||| ||||||||||||    
T  29932697 tgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttagggg 29932749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29981851 - 29981903
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| ||||||||||  ||  |||||||||||||| ||||||||||||    
T  29981851 tgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttagggg 29981903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 47615572 - 47615608
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattg 50  Q
    |||||||||||||||||||||||| || |||||||||    
T  47615572 agatgcaaaggggctaaatcttagggggccaaaattg 47615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 54539858 - 54539806
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||| | |||||||||||| ||| |||||||||||||| |||| |||||||    
T  54539858 tgcaaatgagctaaatcttaggggatcaaaattgtagtttttgtatttagggg 54539806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 54987002 - 54987058
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||| |||||||||||||||  ||||||| |||||| | ||| |||||||    
T  54987002 agatgcaaaggagctaaatcttagagggtcaaaattatagtttttatacatagggga 54987058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 11258809 - 11258861
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  11258809 tgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggg 11258861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 22587949 - 22588004
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||  || ||||||||||||||| ||||| ||||||    
T  22587949 agatgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacatagggg 22588004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 22848294 - 22848241
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||||||||||| |  ||||||||||||||| |||| ||||||||    
T  22848294 tgcaaaggggctaaatcttagggagccaaaattgtagtttttgtatttagggga 22848241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38839345 - 38839293
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || ||||||||||||||| |||| |||||||    
T  38839345 tgcaatggggctaaatcttagggggccaaaattgtagtttttgtagttagggg 38839293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 38840491 - 38840543
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||| || | ||||||||||||| ||||||||||||    
T  38840491 tgcaatggggctaaatcttagggggctaaaattgtagtttttgtacttagggg 38840543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 41878197 - 41878145
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||||||||||  || ||||||||||||||| ||||||||||||    
T  41878197 tgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttagggg 41878145  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 7899886 - 7899933
Alignment:
Q  23 ggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||||| || | ||||||||||||| |||||||||||||    
T  7899886 ggggctaaatcttagggggctaaaattgtagtttctgtacttagggga 7899933  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11996813 - 11996758
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||| ||||||| |||||||||||| || ||||||||||||| ||||| ||||||    
T  11996813 agatgtaaaggggttaaatcttagagaactaaaattgtagtttttgtacatagggg 11996758  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 18904473 - 18904422
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtactta 65  Q
    ||||| ||||||||||| |||||| | |||||||||||||||| ||||||||    
T  18904473 agatgtaaaggggctaattcttagggaaccaaaattgtagtttttgtactta 18904422  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 22587606 - 22587559
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgta 61  Q
    |||||||||| ||||||||||||| || ||||||||||||||| ||||    
T  22587606 agatgcaaagaggctaaatcttagggggccaaaattgtagtttttgta 22587559  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 23869530 - 23869585
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||||||||||||||||| |  | ||||||||||||| |||| |||||||    
T  23869530 agatgcaaaggggctaaatcttagggagctaaaattgtagtttttgtatttagggg 23869585  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 7898794 - 7898744
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    ||||| ||||||||||||||| || ||||||||||||||| | ||||||||    
T  7898794 tgcaatggggctaaatcttagggggccaaaattgtagtttctatacttagg 7898744  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 18299479 - 18299426
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagg 67  Q
    ||||||||| |||||||||| ||| || ||||||||||||||| | ||||||||    
T  18299479 agatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttagg 18299426  T

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Target: scaffold0320 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19594 - 19539
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| | ||||||||||    
T  19594 agatgcaaaggggttaaatcttaggggatcaaaattgtagtttttatacttagggg 19539  T

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Target: scaffold2034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 337 - 283
Alignment:
Q  16 atgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggga 70  Q
    ||||||||||||||| |||||| ||||||||||| |||||| ||||| |||||||    
T  337 atgcaaaggggctaattcttaggggaccaaaattatagtttttgtacatagggga 283  T

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Target: scaffold0632 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 3306 - 3351
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtac 62  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||    
T  3306 tgcaaaggggctaaatcttaggggaccaaaattatagtttttgtac 3351  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 7413 - 7465
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||||||||||| ||  |||||||||||||| ||||| ||||||    
T  7413 tgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggg 7465  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 48413 - 48358
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||||||  |||||||||| ||||||||||| |||||| ||||| ||||||    
T  48413 agatgcaaagggaataaatcttaggggaccaaaattatagtttttgtacatagggg 48358  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 61454 - 61509
Alignment:
Q  14 agatgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    ||||||||| |||||||||| ||| || |||||||| |||||| ||||||||||||    
T  61454 agatgcaaaagggctaaatcatagggggccaaaattatagtttttgtacttagggg 61509  T

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Target: scaffold0302 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17573 - 17521
Alignment:
Q  17 tgcaaaggggctaaatcttagaggaccaaaattgtagtttatgtacttagggg 69  Q
    |||||||||| ||| |||| | || ||||||||||||||| ||||||||||||    
T  17573 tgcaaaggggataattcttggggggccaaaattgtagtttttgtacttagggg 17521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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