View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937_low_9 (Length: 244)
Name: NF1937_low_9
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14314406 - 14314631
Alignment:
| Q |
1 |
gtataaccattaatatgttcatcgatagttgatatcactcactttattccttgaagtgagttgttcactttggaagaatcggatgcatctaaaataactt |
100 |
Q |
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| T |
14314406 |
gtataaccattaatatgttcatcgatagttgatatcactcactttattctttgaagtgagttgttcactttggaagaatcggatgcatctaaaataactt |
14314505 |
T |
|
| Q |
101 |
ttcaatcttatgaagcaccaacactatggataagttttatgaagcaccaacacttcaaatcgaaagtgtgtctggttgttaagagtcccacgttggatga |
200 |
Q |
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| T |
14314506 |
ttcaatcttatgaagcaccaagactatggataagttttatgaagcaccaacacttcaaatcgaaagtgtgtctggttgttaagagtcccacgttggatga |
14314605 |
T |
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| Q |
201 |
gagatgacttgaagatatgtttaaac |
226 |
Q |
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| T |
14314606 |
gagatgacttgaagatatttttaaac |
14314631 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 47684499 - 47684545
Alignment:
| Q |
177 |
tgttaagagtcccacgttggatgagagatgacttgaagatatgttta |
223 |
Q |
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| T |
47684499 |
tgttaagagtcccacattggatgagagatggcctaaagatatgttta |
47684545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 3591850 - 3591883
Alignment:
| Q |
143 |
agcaccaacacttcaaatcgaaagtgtgtctggt |
176 |
Q |
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| T |
3591850 |
agcaccaacacttcaaattgaaagtgtgtctggt |
3591883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 29038577 - 29038622
Alignment:
| Q |
176 |
ttgttaagagtcccacgttggatgagagatgacttgaagatatgtt |
221 |
Q |
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|||||||||||||||| |||||||||| ||||| |||| ||||||| |
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| T |
29038577 |
ttgttaagagtcccacattggatgagatatgacctgaaaatatgtt |
29038622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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