View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_10 (Length: 630)
Name: NF19380_high_10
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 52376175 - 52376773
Alignment:
| Q |
18 |
gtcatataattaatattgtattcaaagttccatagctttgaccacttgctttttctttaatgatccaatagtaataataaacttagtacaagcaagtgta |
117 |
Q |
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| T |
52376175 |
gtcatataattaatattgtattcaaagttccatagctttgaccacttgctttttctttaatgatccaatagtaataataaacttagtgcaagcaagtgta |
52376274 |
T |
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| Q |
118 |
taacttattttcccataggcagatgttaggatcaacaaatacgcacattttgttacggggaaaattgatcggtattacatactcaaccccgtttaaaatt |
217 |
Q |
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| T |
52376275 |
taacttattttcccataggcagatgttaggatcaacaaatacgcacattttgttacggggaaaattgatcggtattacatactcaaccccgtttaaaatt |
52376374 |
T |
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| Q |
218 |
tcaatggaaacttaactgtttatgttaataattaacattgaattaagaatgtgatgatgttacaattctatacttcaatcatcatctgtagaggtccctt |
317 |
Q |
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| T |
52376375 |
tcaacggaaacttaactgtttatgttaataattaacattgaattaagaatgtgatgatgttacaattctatacttcaatcatcatctgtagaggtc---- |
52376470 |
T |
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| Q |
318 |
taggtgctcctttaggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcgtctgttagatccccttgaggtgctccggctggcgacacaat |
417 |
Q |
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| T |
52376471 |
--------cctttaggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcatctgttagatccccttgaggtgctccggttggagacacaat |
52376562 |
T |
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| Q |
418 |
tggagcacttccaggtgctttagaactaccggctacattctcgccattgccttttggtgcctctgcaggcgcgttggtggatgctgctgtgggtgcattt |
517 |
Q |
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| T |
52376563 |
tggagcactttcaggtgctttagaactaccggctacattcgcgccattgccttttggtgcctctgcaggcgcgttggtggatgctgctgtgggtgcattt |
52376662 |
T |
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| Q |
518 |
gtgggtgcagattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatttattggatgaaccatctgttgttggtgtct |
617 |
Q |
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| T |
52376663 |
gtgggtgcagattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatttattggatgaaccatctgctgttggtgtcg |
52376762 |
T |
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