View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_14 (Length: 569)
Name: NF19380_high_14
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 451
Target Start/End: Complemental strand, 9783674 - 9783244
Alignment:
| Q |
22 |
ataccttcaacttttagattttctttcaaatttcttcagatttgaatcttccagaaaattctcccaaatcccaagataccttcatatgaagaataacctt |
121 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9783674 |
ataccttcaactttaaaattttctttcaaatttcttcagatttgaatcttccaaaaaattctcccaaatcccaagataccttcatacgaagaataacctt |
9783575 |
T |
|
| Q |
122 |
attgaggtgaataatgaattgttcatcatatgatatgttgaaaaatgaatcgattcatcatagttgcatgcgaatcagtttaagctttgtatttcaaaaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
9783574 |
attgaggtgaataatgaattgttcatcatatgatatgttgaaaaatgaatcgattgatcatagt----tgcgaatcagtttaagctttttatttcaaaaa |
9783479 |
T |
|
| Q |
222 |
ccaaattttgttcacataggatctgattcataannnnnnnnnnnaaggtatgctaatgtgagccaagtaatgatttgggactagaataagattaggacca |
321 |
Q |
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|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9783478 |
ccaaattttgtttacataggatc-gattcataa--tatttttttaaggtatgctaatgtgagccaagtaatgatttgggactagaataagattaggacca |
9783382 |
T |
|
| Q |
322 |
aaatcaaattcttgggaacaatgcggtagatattaaatgaggt-agtaacaatgacaaagatcgtttaaacaaaggagt-------aaaagtgaacacta |
413 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
9783381 |
aaatcaaatttttgggaacaatgcggtagatatcaaatgaggtaagtaacaatgacaaagatcgtttaaacaaaggagttgaggaaaatagtgaacacta |
9783282 |
T |
|
| Q |
414 |
taatactttaaagtttgattagatatgtatctaccatc |
451 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
9783281 |
gaatactttaaagtttgattagatatgtatctaccatc |
9783244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 559
Target Start/End: Complemental strand, 9783161 - 9783133
Alignment:
| Q |
531 |
acagagcatcatatgacattttgcctatg |
559 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
9783161 |
acagagcatcatatgacattttgcctatg |
9783133 |
T |
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Back To:
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