View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_19 (Length: 528)
Name: NF19380_high_19
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 323371 - 323880
Alignment:
| Q |
19 |
acttgagaatatgaagaagttatttaaatgaaaagcaa-cctgacctaacctcaattattgcatgatccctttcagcaaaggcagtagctacacagccct |
117 |
Q |
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||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
323371 |
acttgagaataagaagaagttatttaaatgaaaagaaaacctgacctaacctcaattattgcatgatccctttcagaaaaagcagtagctacacagccct |
323470 |
T |
|
| Q |
118 |
ggaaaaacttaagctgcttctgggcttcgatattctttgaaagctcggcagagtgtagatctgcgagttgagctttaattctgtaagcctgagaaagttg |
217 |
Q |
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|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
323471 |
ggaaaaatttaagctgcttctcggcttcgatattctttgaaagctcggcagcgtgtagatctgcgagttgagctttaattctgtaagcctgagaaagttg |
323570 |
T |
|
| Q |
218 |
gtcttgtagattaagagtatcagttgtagaggcagccaacttattttgaagggtttgaatctcctgctccaatccagctgt---------atgcattcgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
323571 |
gtcttgtagattaagagtatcagttgtagaggcagccaacttattttgaagggtttgaatctcctgctccaatccagctgttctttgaaaatgcattcgt |
323670 |
T |
|
| Q |
309 |
gtagcgacactaagatacgcaggtcctgcttgttgcatacatagctgttcgatatctttgcgtaattcatcacgctctacaatnnnnnnnnnnnnatata |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
323671 |
gtagcgacactaagatacgcaggtcctgcttgttgcatacatagctgttcgatatctttgcgtaattcatcacgctctacaat--cacacacacaatata |
323768 |
T |
|
| Q |
409 |
tgactatgactttaacaattgaagaaatcaaatgaa--ggaattaagatacatacatacataccgtgttcgagttgtcggatacgacccaataacgattc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
323769 |
tgactatgactttaacaattgaagaaatgaaatgaaatgaaatgaaggaattaagatacataccgtgttcgagttgtcggatacgacccaataacgattc |
323868 |
T |
|
| Q |
507 |
atgatgattcat |
518 |
Q |
| |
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|||||||||||| |
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|
| T |
323869 |
atgatgattcat |
323880 |
T |
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