View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_28 (Length: 449)
Name: NF19380_high_28
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 56313229 - 56312816
Alignment:
| Q |
13 |
gagagatgaaaggaattaattaatttgtggtcagaatttaaaaattcatgcatgaaatagtacatgtgtatgtatgtatgcgagaaaagnnnnnnnnnnn |
112 |
Q |
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| T |
56313229 |
gagagatgaaaggaattaattaatttgtggtcagaattttaaaattcatgcatgaaatagtacatgtgtatgtatgtatgcgagagaaggagagagagag |
56313130 |
T |
|
| Q |
113 |
nnnnnnnattaatcacaaacggtgatagttgttgtatgaatatattttaggcactgtttaatttgtactctctttctttctttaatttctatcacgtaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313129 |
agaga--attaatcacaaacggtgatagttgttgtatgaatatattttaggtactgtttaatttgtactctctttctttctttaatttctatcacgtaat |
56313032 |
T |
|
| Q |
213 |
aattaattgctcactctctccctcttgcattcttggcttctaactaatttgannnnnnnnnnnnnnnnggctgcaagtttcacgcagctagctac--tat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
56313031 |
aattaattgctcactctctccctcttgcattcttggcttctaactaatttga----atatatatatatggctgcaagtttcacgcagctagctactatat |
56312936 |
T |
|
| Q |
311 |
tgttttggtgtgctatagctttggatctatgattagttggaaatcaagcgtgtgtatactatatatttatggattctgaaaaaagacgactcaaaatcaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
56312935 |
tgttttggtgtgctatagctttggatctatgattagatggaaatcaagcgtgtgtatactatatatttatggattctg-aaaaagacgacccaaaatcaa |
56312837 |
T |
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| Q |
411 |
gatgcataatatataatatag |
431 |
Q |
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| T |
56312836 |
gatgcataatatataatatag |
56312816 |
T |
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