View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_37 (Length: 413)
Name: NF19380_high_37
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 40514898 - 40515285
Alignment:
| Q |
16 |
agataagaggcaattgtaattaagagagttatcattattaggcacacaagaaataagatgaaatatgccannnnnnnaaactcttcatcatgaatgttca |
115 |
Q |
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| T |
40514898 |
agataagaggcaattgtaattaagagagttatcattattaggcatacaagaaataagatgaaataagccattttcttaaactcttcatcatgaatgttca |
40514997 |
T |
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| Q |
116 |
tgtctctactataattatgagatcattggttaattttgagcatgatgattttgtttatatatgctaatttccgttatgaaaaatctattgtgaagtgaca |
215 |
Q |
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| T |
40514998 |
tgtctctactataattatgagatcattggttaattttgagcatgatgattttgtttatatatgctaatttccgttatgaaaaatctattgtgaagtgaca |
40515097 |
T |
|
| Q |
216 |
ttcagcatttcccttttaaataattacagtgttttccgtaatggtaaatctatatgtcctattttattttatgttggatcctaatttgtcctattgtaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515098 |
ttcagcatttcccttttaaataattacagtgttttccgtaatggtaaatctatatgtcctattttattttatgttggatcctaatttgtcctattgtaat |
40515197 |
T |
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| Q |
316 |
acatcaaaataagtcaaattgtaagaaaaatattctatactactgctgcgtaccgttatgtatgtctgattcataattcaaagtatta |
403 |
Q |
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| T |
40515198 |
acatcaaaataagtcaaattgtaagaaaaatattctatactactgctgcgtaccgttatgtatgtctgattcataattcaaagtatta |
40515285 |
T |
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