View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_39 (Length: 402)
Name: NF19380_high_39
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 31756127 - 31755766
Alignment:
| Q |
20 |
gagtgtggtatatatcctgattcacaatcattatgttctaactttggtcacatttgcaagccaaatatatgtaacactcaaataacaagcccgccgccgc |
119 |
Q |
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| T |
31756127 |
gagtgtggtatatatcctgattcacaatcattatgttctaactttggtcacatttgcaacccaaatatatgtaacactcaaataacaagcccgccgccgc |
31756028 |
T |
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| Q |
120 |
ctccaccagttcaacctccaccggcaccggcaccttctc---ctcctcgatcgaagacattgacaaccggattattggtttttgcaattgttggatcagt |
216 |
Q |
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| T |
31756027 |
ctccaccag---------------caccttctcctcctcgatcttctcgatcgaagactttgacaaccggattattggtttttgcaattgttggatcagt |
31755943 |
T |
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| Q |
217 |
gggaggttttattggtatatgtacaataatttattgtttatggacaggtgtttgttttgggaaaaagaaagttcatagttctgtgcaaccaacagtcaca |
316 |
Q |
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| T |
31755942 |
gggaggttttattggtatatgtacaataatttattgtttatggacaggtgtttgttttgggaaaaagaaagttcacagttctgtgcaaccaacagtcaca |
31755843 |
T |
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| Q |
317 |
agaggtagtagcaacagttcaaattcaagtgcatcttcgataaaatcggtcattatgcgtcaaggttcgagaataat |
393 |
Q |
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| T |
31755842 |
agaggtagtagcaacagttcaaattcaagtgcatcttcgataaaatcggtcattatgcgtcaaggttcgagaataat |
31755766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 35559131 - 35559055
Alignment:
| Q |
246 |
tttattgtttatggacaggtgtttgttttgggaaaaagaaagttcatagttctgtgcaaccaacagtcacaagaggt |
322 |
Q |
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| T |
35559131 |
tttattgtttgtggagtggtgtgtgttttggtaagaagaaagttcacaattccgttcaaccaacaatcactagaggt |
35559055 |
T |
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