View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_high_43 (Length: 391)
Name: NF19380_high_43
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 31252071 - 31251712
Alignment:
| Q |
13 |
catcaaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagtttta |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252071 |
catctaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagtttta |
31251972 |
T |
|
| Q |
113 |
tgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31251971 |
tgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagaattccaaacagaaacaatgacgagaaaagaaacacatcat |
31251872 |
T |
|
| Q |
213 |
ttgattgnnnnnnnnnnnnnnatgacttagtatgtaaaataacaggtttaatgttatttttttga-ggaagagtcggtttaatannnnnnnnnnnnatta |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
31251871 |
ttgattgtttttttcctttttatgacttagtatgtaaaataacaggtttaatgttatttttttgagggaagagtcggtttaata-tttttttttttatta |
31251773 |
T |
|
| Q |
312 |
tttaatatgaaatctcccgtttcttttcttggagtcaaacctaatacgtatgggaagtagc |
372 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31251772 |
tttaatatgaaatctcccgtttctttttctggagtcaaacctaatacgcatgggaagtagc |
31251712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 25815078 - 25815437
Alignment:
| Q |
19 |
attgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25815078 |
attgattcttatctcatttcattaccatgtataaaatgaccccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagt |
25815177 |
T |
|
| Q |
119 |
tttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25815178 |
tttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgatt |
25815277 |
T |
|
| Q |
219 |
g-nnnnnnnnnnnnnnatgacttagtatgtaaaataaca-----ggtttaatgttatttttttga-ggaagagtcggtttaatannnnnnnnnnnnatta |
311 |
Q |
| |
|
| |||||||||||||||||| |||| |||||||| |||||||||| | |||||||||||||||||| |||| |
|
|
| T |
25815278 |
gttttttttcctttttatgacttagtatgtaaaagaacagagtcggtttaatattatttttttaagggaagagtcggtttaata-tttttttatttatta |
25815376 |
T |
|
| Q |
312 |
tttaatatgaaatctcccgtttcttttcttggagtcaaacctaatacgtatgggaagtagc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25815377 |
tttaatatgaaatctcccgtttcttttcctggagtcaaacctaatacgcatgggaagtagc |
25815437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 23052851 - 23052912
Alignment:
| Q |
13 |
catcaaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaa |
74 |
Q |
| |
|
|||| |||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23052851 |
catctaattgattctcatctcattccatcaccatgtataaaatcacctcattagatgataaa |
23052912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 23052912 - 23052961
Alignment:
| Q |
105 |
aagttttatgcagttttggaatgctacccctaataaatcaccacttttgtg |
155 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
23052912 |
aagttttatgcagttttggaatggt-cccctaataaatcaccacttgtgtg |
23052961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University