View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_51 (Length: 357)
Name: NF19380_high_51
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 4117571 - 4117896
Alignment:
| Q |
13 |
atacttgaaggaactataatgacattaagttggtaatgtccgagatgtatttgaaactaaaagaataatgtgcacaatgaatttgatagcaaatcccaac |
112 |
Q |
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| T |
4117571 |
atacttgcaggaactataatgacattaagttggtaatgtccgagatgtatttgaaactaaaagaataatgtgcacgatgaatttgatagcaaatcccgac |
4117670 |
T |
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| Q |
113 |
agattggcgagtctgattaacattttccaattccaaggataattttcgaatattgataatgtgagagactaagttgaaacagctctacatttttaaggat |
212 |
Q |
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| T |
4117671 |
agattggcgagtctgattaacattttccaattccaaggataattttcgaatattgataatgtgagagactaagttgaaacggctctacatttttaaggat |
4117770 |
T |
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| Q |
213 |
gtaacgtaatcgagtactaactaaaattaaaaggccgaacatggaattacaataaattacctgcaaacctgcccatcctttctctatatcatcttgtgta |
312 |
Q |
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| T |
4117771 |
gtaaggcaatcgagtactaactaaaattaaaaggccgaacatggaattacaataaattacctgcaaacctgcccatcctttctctatatcatcttgtgta |
4117870 |
T |
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| Q |
313 |
gagtcagactcattcacccatcccca |
338 |
Q |
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| T |
4117871 |
gagtcagactcattcacccatcccca |
4117896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 16827384 - 16827337
Alignment:
| Q |
25 |
actataatgacattaagttggtaatgtccgagatgtatttgaaactaa |
72 |
Q |
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| T |
16827384 |
actagaatgacattaagtttgtaatctccgagatgaatttgaaactaa |
16827337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 32702695 - 32702746
Alignment:
| Q |
31 |
atgacattaagttggtaatgtccgagatgtatttgaaactaaaagaataatg |
82 |
Q |
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| T |
32702695 |
atgacaataagttggtaatgtcggagatgcatttgaaactaagagaataatg |
32702746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 26270906 - 26270959
Alignment:
| Q |
127 |
gattaacattttccaattccaaggataattttcgaatattgataatgtgagaga |
180 |
Q |
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| T |
26270906 |
gattaatattttgcaattccaatgatcattttggaatattgataatgtgagaga |
26270959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 7424293 - 7424209
Alignment:
| Q |
128 |
attaacattttccaattccaaggataattttcgaatattgataatgtgagagactaagttgaaacagctctacatttttaaggat |
212 |
Q |
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| T |
7424293 |
attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttgatacagtcctacaattttagggat |
7424209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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