View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_high_53 (Length: 347)
Name: NF19380_high_53
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 21384382 - 21384672
Alignment:
| Q |
41 |
caccaaatcctatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaa- |
139 |
Q |
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| T |
21384382 |
caccaaatcctatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaaa |
21384481 |
T |
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| Q |
140 |
taaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgcttacctctctcagaacgactattct |
239 |
Q |
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| T |
21384482 |
taaagtggggcata--acttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgctttcctctctcagaacgactattct |
21384579 |
T |
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| Q |
240 |
cagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaatagtgttcttcattgatctcttttg |
332 |
Q |
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| T |
21384580 |
cagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaatagtgttcttcattgatctcttttg |
21384672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 109 - 332
Target Start/End: Complemental strand, 21373108 - 21372885
Alignment:
| Q |
109 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagcc |
208 |
Q |
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| T |
21373108 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagcc |
21373009 |
T |
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| Q |
209 |
acacgcttacctctctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaat |
308 |
Q |
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| T |
21373008 |
acacgctttcctctctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaat |
21372909 |
T |
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| Q |
309 |
agtgttcttcattgatctcttttg |
332 |
Q |
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| T |
21372908 |
agtgttcttcattgatctcttttg |
21372885 |
T |
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