View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_high_6 (Length: 697)
Name: NF19380_high_6
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_6 |
 | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 681
Target Start/End: Complemental strand, 35900990 - 35900328
Alignment:
| Q |
16 |
cataggtacctgcccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttccaccacaagaagattttcaatatcaatgtgttca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35900990 |
cataggtacctgcccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttcctccacaagaagattttcaatatcaatgtgttca |
35900891 |
T |
|
| Q |
116 |
agaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgta |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
35900890 |
agaatttggagcaagtttctctccaagatggtagtaaaaatattgagcctgccaagccaacgaagccaatgaagaatcctatcccccc---actcatgta |
35900794 |
T |
|
| Q |
216 |
taatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900793 |
taatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttct |
35900694 |
T |
|
| Q |
316 |
ccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttcccatagagcttgttgtttgacaagtcca |
415 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35900693 |
ccgcagagattagaattttcttcaaaacatgaagcgttaaatgtctgcagttgcgttccaattggaattttcacatagagcttgttgtttgacaagtcca |
35900594 |
T |
|
| Q |
416 |
accaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaagtttcctat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900593 |
accaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaagtttcctat |
35900494 |
T |
|
| Q |
516 |
gttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtattacgcctgtaagatgg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
35900493 |
gttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtatttcccctgtaagatgg |
35900394 |
T |
|
| Q |
616 |
ttgcttgagagatcaattgtttttaaaagcttataagaatttttgtatagtcggtctacccctttc |
681 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||| |||| |||| ||| |||||||||||||| |
|
|
| T |
35900393 |
ttgcttgaaagatcaattgtttttaaaaacctataaggatttatgtaaagttggtctacccctttc |
35900328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 72 - 649
Target Start/End: Complemental strand, 44614499 - 44613922
Alignment:
| Q |
72 |
ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag |
171 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
44614499 |
ttactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaacattgagccgaccaag |
44614400 |
T |
|
| Q |
172 |
ccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatc---tcctgcatcagttgtttgcactt |
268 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |
|
|
| T |
44614399 |
ccaacgaaaccagtgaagaatcctatccccatg---ctcatgtataatgcttccaaaaatattgaattatcatcatctcctgcatcagttgttggcactt |
44614303 |
T |
|
| Q |
269 |
gatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttg |
368 |
Q |
| |
|
||| ||| | ||| ||||| ||||||| ||| ||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||| || |
|
|
| T |
44614302 |
gatgttttgatggatcttcttctggacattttctatcaaggggttctccacagagatttgaatttccttcaaaacttgaagcattaaagctctgcagctg |
44614203 |
T |
|
| Q |
369 |
cattccaattggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaaga |
468 |
Q |
| |
|
| ||||||||||||| || ||| |||||| ||||||||||| |||||| | |||||||||||| | |||| ||||||||||||||| ||||||||| |
|
|
| T |
44614202 |
cgttccaattggaatgtttccacagagctgattgtttgacaaatccaacatggcaagacgatcaatgcgagctatactggaaggaattctacctgaaaga |
44614103 |
T |
|
| Q |
469 |
tgatttcttgagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatca |
568 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44614102 |
caatttcttgacagatcaagaaattcaagtaacttgaagtttcctatgtttgaaatgatttccccactgagattgttccttgacaaatttaaggaaatca |
44614003 |
T |
|
| Q |
569 |
aaccaaataagtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttat |
649 |
Q |
| |
|
| |||| |||||| | | ||| ||||||| | || |||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
44614002 |
atccaattaagtattgaacttccgatggtatttccccagtaagatggttgcttgagagatcaatggtttttaaaaacttat |
44613922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 74 - 643
Target Start/End: Original strand, 17809940 - 17810506
Alignment:
| Q |
74 |
actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc |
173 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
17809940 |
actgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattgagcctaccaagcc |
17810039 |
T |
|
| Q |
174 |
aacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcact-tgata |
272 |
Q |
| |
|
|||||| ||| ||||| || | ||||||||||||| ||| ||||| ||| | || ||||||||||||| |||||| ||||| | | |
|
|
| T |
17810040 |
aacgaaaccagtaaagaacccaagccccatg---ctcatgtataatgtttctaaaaacattgagttctcatctcctgcatttgttgttggcactctcgga |
17810136 |
T |
|
| Q |
273 |
tttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcatt |
372 |
Q |
| |
|
||| | || ||||| || ||||| || ||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||||||| || ||| || |
|
|
| T |
17810137 |
tttgcg-ggatcttctccaggacatattttatcaagtggttctccacaaagattaaaattttcttcgaaactggaagcattaaatgtctgaagctgcgtt |
17810235 |
T |
|
| Q |
373 |
ccaattggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgat |
472 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
17810236 |
ccaattggaatttttccatagagctgattgtttgacaaatccaacatagagagacgatcaatgtgagctagactggaaggaattctgcctgacagatgat |
17810335 |
T |
|
| Q |
473 |
ttcttgagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaacc |
572 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
17810336 |
ttcttgacagatcaagaaattcgagtgatttgaagtttcctatgtttgaaatgacttccccactgagattgttccttgacaaatttaaggaaatcaatcc |
17810435 |
T |
|
| Q |
573 |
aaataagtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaa |
643 |
Q |
| |
|
||| |||||||| |||||| ||||||| | |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17810436 |
aaacaagtactcaatttcagctggtatgtcccctgtaagatggttgcttgaaagatcaatgctttttaaaa |
17810506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 214 - 645
Target Start/End: Original strand, 11542858 - 11543289
Alignment:
| Q |
214 |
tataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggtt |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| |||| ||||| || ||||| |||||||||||||||| |
|
|
| T |
11542858 |
tataatgcttccaaaaatattgaattgtcatcttctgcatcagttgtcggcacttgatgttttggtgaatcttctccaggacattttatatcaagtggtt |
11542957 |
T |
|
| Q |
314 |
ctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttcccatagagcttgttgtttgacaagtc |
413 |
Q |
| |
|
||||||| |||||| ||||| ||||||||| |||||| |||||||||| || ||| |||||||||||| ||| ||||| || | |||||||||||||| |
|
|
| T |
11542958 |
ctccacaaagattataatttccttcaaaacttgaagcgctaaatgtctgaagctgccttccaattggaacttttccatatagttgattgtttgacaagtc |
11543057 |
T |
|
| Q |
414 |
caaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaagtttcct |
513 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11543058 |
caaccaagtgagacgatcaatatgagctagactggaaggaattctgcctgaaagacggtttcttgacagatcaagaaattcaagtgacttgaagtttcct |
11543157 |
T |
|
| Q |
514 |
atgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtattacgcctgtaagat |
613 |
Q |
| |
|
||||| | ||| |||| ||||||||||||||| || ||||||||||| |||||||| |||| ||| ||||| ||||| | ||||||| | |||||||||| |
|
|
| T |
11543158 |
atgtttgcaattattttcccactgagattgtttcttgacaaatttaatgaaatcaatccaattaaatactcaatttccattggtatttcccctgtaagat |
11543257 |
T |
|
| Q |
614 |
ggttgcttgagagatcaattgtttttaaaagc |
645 |
Q |
| |
|
|||||||||| | |||||| ||||||||||| |
|
|
| T |
11543258 |
ggttgcttgacatatcaatgctttttaaaagc |
11543289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 208 - 568
Target Start/End: Complemental strand, 44146671 - 44146311
Alignment:
| Q |
208 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
307 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||||||| || ||||||||| ||| | ||||||||| |||||||| || |||||| |
|
|
| T |
44146671 |
ctcatgtagaatgcttctaaaaatattgaattgtcatctcctgcatcagtagtcggcacttgatgttttgatggctcttctcctggacatttattatcaa |
44146572 |
T |
|
| Q |
308 |
gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttcccatagagcttgttgtttga |
407 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| ||||| |||||| || | |||||||||||||||||||||||| || ||||| |
|
|
| T |
44146571 |
gtggttctccacagagattagaatttccttcaaaatatgaagtgttaaagctctgcaactgtgtcccaattggaattttcccatagagccgattatttga |
44146472 |
T |
|
| Q |
408 |
caagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaag |
507 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||| |||||||||||| | ||||||||| |||||||||| |||||||||||||| | ||| || ||| |
|
|
| T |
44146471 |
caagtccaacatagtgagacgatcaatatgagctaggctggaaggaattttgcctgaaagacgatttcttgaaagatcaagaaattctaatgagttaaag |
44146372 |
T |
|
| Q |
508 |
tttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatca |
568 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44146371 |
tttcctatgtttgaaatgatttccccactgagattgttccttgacaaatttaaggaaatca |
44146311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 279 - 511
Target Start/End: Original strand, 44794102 - 44794334
Alignment:
| Q |
279 |
tggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaatt |
378 |
Q |
| |
|
||||||||| |||| || ||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| || ||||||||||| ||| |||||||| |
|
|
| T |
44794102 |
tggctcttcttctgggcattttctatcaaggggttctccacagagattagaatttccttcaaaacttgaagcgttgaatgtctgcagctgcgttccaatt |
44794201 |
T |
|
| Q |
379 |
ggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttg |
478 |
Q |
| |
|
||||||| |||||||||| |||||||| || | ||| ||| ||||||||||| || |||||||||||||||||| | ||||| | ||||||||||| |
|
|
| T |
44794202 |
ggaatttctccatagagctcattgtttgaaaaatttaacatagtaagacgatcaatatgagctagactggaaggaattttgcctgacaaatgatttcttg |
44794301 |
T |
|
| Q |
479 |
agagatcaagaaattcaagtgacttgaagtttc |
511 |
Q |
| |
|
| |||||||||||||| | ||| || ||||||| |
|
|
| T |
44794302 |
aaagatcaagaaattctaatgagttaaagtttc |
44794334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 72 - 313
Target Start/End: Original strand, 44783965 - 44784203
Alignment:
| Q |
72 |
ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag |
171 |
Q |
| |
|
||||||||||||||| | || |||| ||||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
44783965 |
ttactgcttccaccagatgatgattctcaatattaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaaa |
44784064 |
T |
|
| Q |
172 |
ccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgat |
271 |
Q |
| |
|
|||||||| | | ||||||||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
44784065 |
ccaacgaaactagtaaagaatcctatccccatg---ctcatgtataacgcttccaaaaatactgaattgtcatctccagcatcaattgttggcacttgat |
44784161 |
T |
|
| Q |
272 |
atttcggtggctcttcgcctggacactttatatcaagtggtt |
313 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
44784162 |
gttttggtggctcttcacctggacattttatatgaagtggtt |
44784203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 594 - 649
Target Start/End: Original strand, 44794361 - 44794416
Alignment:
| Q |
594 |
tggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttat |
649 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
44794361 |
tggtatttcgcctgtaagatggttgcttgagagatcaatggtttttaaaaacttat |
44794416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 649
Target Start/End: Complemental strand, 44146298 - 44146253
Alignment:
| Q |
604 |
cctgtaagatggttgcttgagagatcaattgtttttaaaagcttat |
649 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44146298 |
cctgtaagatggttgcttgagagatcaatggtttttaaaagcttat |
44146253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 11542783 - 11542859
Alignment:
| Q |
90 |
gaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagccta |
166 |
Q |
| |
|
||||||| ||||||| || | ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11542783 |
gaagattctcaatattaaagcattcaagaatttggagtaggtttctctccaagatggcagtaacgatattgagccta |
11542859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 65 - 662
Target Start/End: Complemental strand, 182462 - 181868
Alignment:
| Q |
65 |
tatacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
164 |
Q |
| |
|
|||||||| || |||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
182462 |
tatacattcacggcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcc |
182363 |
T |
|
| Q |
165 |
taccaagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgc |
264 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||||||||| | |||| |||||||||||||| |||||| || |
|
|
| T |
182362 |
taccaagccaatgaaaccagtgaagaatcctatccccatg---ctcatatataatgcttccaaaaatactgaattttcatctcctgcatccgttgttggc |
182266 |
T |
|
| Q |
265 |
acttgatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgca |
364 |
Q |
| |
|
||||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
182265 |
acttgatgttttggtgtctcttcgcatggacactttatatcaagtggttatccacatagattagaattttcttcaaaacttgaagcgttaaatgtctgca |
182166 |
T |
|
| Q |
365 |
gttgcattccaattggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctga |
464 |
Q |
| |
|
| ||| ||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
182165 |
gctgcgttccaattggaattttcccattgagatgattgtatgacaagtccaaccaagtgagacggtcaatgtgagctagactggaaggaattcttcctga |
182066 |
T |
|
| Q |
465 |
aagatgatttcttgagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaa |
564 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
182065 |
cagattatttcttgacagatcaagaaattcgagtgacttgaagtttcctatgtttgaaatgatttccccacggagattgttccttgacaaatttaatgaa |
181966 |
T |
|
| Q |
565 |
atcaaaccaaataagtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttataagaatttttgta |
662 |
Q |
| |
|
||||| ||| |||||| | ||||||| ||||||| | |||||||||| |||||||||||||||||| |||||||||| ||||| | ||||||||| |
|
|
| T |
181965 |
atcaatgcaactaagtattgcatttcagttggtatttcccctgtaagattgttgcttgagagatcaatcgtttttaaaaacttatctgcatttttgta |
181868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 78 - 662
Target Start/End: Complemental strand, 171362 - 170781
Alignment:
| Q |
78 |
cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg |
177 |
Q |
| |
|
||||||||||| ||| ||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
171362 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
171263 |
T |
|
| Q |
178 |
aagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcg |
277 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
171262 |
aaaccagtgaagaatcctatccccatg---ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttg |
171166 |
T |
|
| Q |
278 |
gtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaat |
377 |
Q |
| |
|
||| ||||| ||||| || ||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||| ||| |||||| |
|
|
| T |
171165 |
ctggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcagctgcgttccaac |
171066 |
T |
|
| Q |
378 |
tggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttctt |
477 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
171065 |
tggaactttcccatagagctgattgtttgacaaatccaacatagtgagacgatcaatgcgagctagactggaaggaatttcgcctgacaaatgatttctt |
170966 |
T |
|
| Q |
478 |
gagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaata |
577 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
170965 |
gacagatctagaaattcaagtgatttgaagtttcctatgtttaaaatgatttccccactgagattgttccttgacaaatttaatgaaatcaaaccaaata |
170866 |
T |
|
| Q |
578 |
agtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttataagaatttttgta |
662 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| |
|
|
| T |
170865 |
agtactccatttcagttggtatttcccctgtaagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgta |
170781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 282; Significance: 1e-157; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 78 - 662
Target Start/End: Original strand, 27430 - 28011
Alignment:
| Q |
78 |
cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg |
177 |
Q |
| |
|
||||||||||| ||| ||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27430 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
27529 |
T |
|
| Q |
178 |
aagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcg |
277 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
27530 |
aaaccagtgaagaatcctatccccatg---ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttg |
27626 |
T |
|
| Q |
278 |
gtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaat |
377 |
Q |
| |
|
||| ||||| ||||| || ||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||| ||| |||||| |
|
|
| T |
27627 |
ctggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcagctgcgttccaac |
27726 |
T |
|
| Q |
378 |
tggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttctt |
477 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
27727 |
tggaactttcccatagagctgattgtttgacaaatccaacatagtgagacgatcaatgcgagctagactggaaggaatttcgcctgacaaatgatttctt |
27826 |
T |
|
| Q |
478 |
gagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaata |
577 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
27827 |
gacagatctagaaattcaagtgatttgaagtttcctatgtttaaaatgatttccccactgagattgttccttgacaaatttaatgaaatcaaaccaaata |
27926 |
T |
|
| Q |
578 |
agtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttataagaatttttgta |
662 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| |
|
|
| T |
27927 |
agtactccatttcagttggtatttcccctgtaagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgta |
28011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 69 - 643
Target Start/End: Complemental strand, 26730116 - 26729545
Alignment:
| Q |
69 |
catttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctacc |
168 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| ||||| |||||||||||| |||||||||||||||||||||| | || ||| | ||||||||||||| |
|
|
| T |
26730116 |
cattcactgcttccaccacatgaaggctttcaagatcaaggtgttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctacc |
26730017 |
T |
|
| Q |
169 |
aagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcactt |
268 |
Q |
| |
|
||||||||||| | | |||||||||||| ||||||||||| ||||||||||||||| |||| || | ||||| || |||||| |||||| |
|
|
| T |
26730016 |
aagccaacgaaactagtgaagaatcctatccccatg---ctcatgtataaagcttccaaaaatattgaattctcgtttcctgaatttgttgttggcactt |
26729920 |
T |
|
| Q |
269 |
gatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttg |
368 |
Q |
| |
|
||| || | ||||||||| |||||||| |||||| ||||||||||||||||||||| |||||| || ||||||||| |||||||| |||||| || |
|
|
| T |
26729919 |
gatgttcggttggctcttctcctggacattttataccaagtggttctccacagagatcggaatttcctccaaaacatgcggcattaaaactctgcaactg |
26729820 |
T |
|
| Q |
369 |
cattccaattggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaaga |
468 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||| |||||| |||||| |||||||| || |||||||||||||||||||||||||| | | |
|
|
| T |
26729819 |
tattccagttggaatcttcccatagagcagattgtttgacaaatccaacatagtgaggcgatcaatatgagctagactggaaggaattcttcctgacaaa |
26729720 |
T |
|
| Q |
469 |
tgatttcttgagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatca |
568 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26729719 |
tgattacttgatagatcaagaaattcaagtgatttgaagtttcctatgtttgaaattatttccccactaagattgttccttgacaaatttaaggaaatca |
26729620 |
T |
|
| Q |
569 |
aaccaaataagtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaa |
643 |
Q |
| |
|
| |||| ||| |||||||||||| ||||||| | ||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
26729619 |
atccaactaaatactccatttcagttggtatttcccctaaaagatagttgcttgagagatcaatgctttttaaaa |
26729545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 74 - 649
Target Start/End: Original strand, 29505800 - 29506375
Alignment:
| Q |
74 |
actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc |
173 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| | |||||||||||||| || |||||||||||||||||||| || |||||||| |||| ||||| |
|
|
| T |
29505800 |
actgcttccaccacatgaacactttcaatatcaaagcattcaagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagcc |
29505899 |
T |
|
| Q |
174 |
aacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatat |
273 |
Q |
| |
|
||| || | ||||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| || ||||||||| | |
|
|
| T |
29505900 |
aacaaaagtagtgaagaatcctagccccatg---ctcatgtataatgcttccaaaaatattgaactgtaatctcctgcatcagttattggcacttgatgt |
29505996 |
T |
|
| Q |
274 |
ttcggtggctcttcg---cctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgca |
370 |
Q |
| |
|
|| || |||||||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||||| |||||| |||| |||||||| ||| |
|
|
| T |
29505997 |
tttggcggctcttcttctcctggacattttatatcaagtggctctccacagagattaggatttccttcaaaacttgaagcgctaaaagtctgcagctgcg |
29506096 |
T |
|
| Q |
371 |
ttccaattggaattttcccatagagcttgttgtttgacaagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatg |
470 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |||||| |||||| |||||||| || |||||||||||||||||| | ||||| ||||| |
|
|
| T |
29506097 |
ttccaattggaatttttccataaagctgattgtttgacaaatccaacgtagtgaggcgatcaatatgagctagactggaaggaattgtgcctgatagatg |
29506196 |
T |
|
| Q |
471 |
atttcttgagagatcaagaaattcaagtgacttgaagtttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaa |
570 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||| | ||| ||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
29506197 |
atttcttgatagatcaagaaattcaagtgacttgaattttcctatgtctgaaattatttccccactaagattgttccttgacaaatttaaggatgtcaat |
29506296 |
T |
|
| Q |
571 |
ccaaataagtactccatttcaactggtattacgcctgtaagatggttgcttgagagatcaattgtttttaaaagcttat |
649 |
Q |
| |
|
|||| ||||||||| ||||| ||||||| | ||| |||| |||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
29506297 |
ccaagtaagtactcaatttctgttggtatttctcctataaggtggttgcttgagagatcaatgctgtttaaaaacttat |
29506375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 208 - 662
Target Start/End: Original strand, 29227281 - 29227735
Alignment:
| Q |
208 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
307 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| ||| | | ||||||| |||||||| ||| |||||| |
|
|
| T |
29227281 |
ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa |
29227380 |
T |
|
| Q |
308 |
gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttcccatagagcttgttgtttga |
407 |
Q |
| |
|
| || |||||||| || || |||||| | ||||||| |||||||||||| ||||||| || |||||||||||||||| |||||||| | |||| ||| |
|
|
| T |
29227381 |
ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgcaactgtgttccaattggaatttttccatagagttgattgtgtga |
29227480 |
T |
|
| Q |
408 |
caagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaag |
507 |
Q |
| |
|
||| |||||| || |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
29227481 |
caaatccaacatagcaagacgatcaatgtgagctagactggaaggaattctacctgaaagacgatttcttgacagatcaagaaattcgagtgatttgaag |
29227580 |
T |
|
| Q |
508 |
tttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtattacgcctg |
607 |
Q |
| |
|
||||||||||| | |||||||||| | |||||||||||||| ||||||||||||| |||||| ||||||||| || ||||||| ||||||| | || | |
|
|
| T |
29227581 |
tttcctatgtttgaaatgatttccacgctgagattgttccttgacaaatttaaggcaatcaatccaaataagcgcttcatttcagttggtatttcccccg |
29227680 |
T |
|
| Q |
608 |
taagatggttgcttgagagatcaattgtttttaaaagcttataagaatttttgta |
662 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||| || ||||||||| |
|
|
| T |
29227681 |
taagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttgta |
29227735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 208 - 662
Target Start/End: Original strand, 29340580 - 29341034
Alignment:
| Q |
208 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
307 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| ||| | | ||||||| |||||||| ||| |||||| |
|
|
| T |
29340580 |
ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa |
29340679 |
T |
|
| Q |
308 |
gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcagttgcattccaattggaattttcccatagagcttgttgtttga |
407 |
Q |
| |
|
| || |||||||| || || |||||| | ||||||| |||||||||||| ||||||| || |||||||||||||||| |||||||| | |||| ||| |
|
|
| T |
29340680 |
ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgcaactgtgttccaattggaatttttccatagagttgattgtgtga |
29340779 |
T |
|
| Q |
408 |
caagtccaaccaagtgagacgatcaatgtgggctagactggaaggaattcttcctgaaagatgatttcttgagagatcaagaaattcaagtgacttgaag |
507 |
Q |
| |
|
||| |||||| || |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
29340780 |
caaatccaacatagcaagacgatcaatgtgagctagactggaaggaattctacctgaaagacgatttcttgacagatcaagaaattcgagtgatttgaag |
29340879 |
T |
|
| Q |
508 |
tttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtattacgcctg |
607 |
Q |
| |
|
||||||||||| | |||||||||| | |||||||||||||| ||||||||||||| |||||| ||||||||| || ||||||| ||||||| | || | |
|
|
| T |
29340880 |
tttcctatgtttgaaatgatttccacgctgagattgttccttgacaaatttaaggcaatcaatccaaataagcgcttcatttcagttggtatttcccccg |
29340979 |
T |
|
| Q |
608 |
taagatggttgcttgagagatcaattgtttttaaaagcttataagaatttttgta |
662 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||| || ||||||||| |
|
|
| T |
29340980 |
taagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttgta |
29341034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 29218239 - 29218336
Alignment:
| Q |
67 |
tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
164 |
Q |
| |
|
|||||| |||||||||| |||| || |||| ||||||| | | ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
29218239 |
tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc |
29218336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 29331538 - 29331635
Alignment:
| Q |
67 |
tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
164 |
Q |
| |
|
|||||| |||||||||| |||| || |||| ||||||| | | ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
29331538 |
tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc |
29331635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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