View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_high_65 (Length: 262)

Name: NF19380_high_65
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_high_65
NF19380_high_65
[»] chr1 (17 HSPs)
chr1 (1-262)||(17663375-17663636)
chr1 (1-262)||(17700343-17700604)
chr1 (43-262)||(21899136-21899355)
chr1 (176-262)||(38226973-38227059)
chr1 (9-48)||(21899653-21899692)
chr1 (176-244)||(22663678-22663746)
chr1 (176-244)||(38227135-38227203)
chr1 (85-132)||(22663780-22663827)
chr1 (176-244)||(27777493-27777561)
chr1 (176-244)||(27781010-27781078)
chr1 (176-244)||(27782400-27782468)
chr1 (211-262)||(27777597-27777648)
chr1 (211-262)||(27782313-27782364)
chr1 (1-75)||(22666782-22666856)
chr1 (188-258)||(38227049-38227119)
chr1 (176-258)||(38227193-38227275)
chr1 (211-244)||(27781084-27781117)
[»] chr4 (6 HSPs)
chr4 (85-262)||(51220016-51220189)
chr4 (181-261)||(51220804-51220884)
chr4 (176-262)||(35250160-35250246)
chr4 (218-253)||(35250268-35250303)
chr4 (211-262)||(51220484-51220535)
chr4 (224-260)||(51219687-51219723)
[»] chr7 (2 HSPs)
chr7 (49-258)||(440914-441120)
chr7 (230-261)||(440808-440839)
[»] chr8 (3 HSPs)
chr8 (51-115)||(44989244-44989308)
chr8 (67-157)||(44989794-44989884)
chr8 (1-42)||(44989158-44989199)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 17663375 - 17663636
Alignment:
Q  1 tgataataagaagatgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacg 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663375 tgataatgagaagatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacg 17663474  T
Q  101 atttttcaaacatcacaagattccaaggaaccagcaggctctaactttgatattgaaggcatgaagaatgttagggaagatgaaaccgaattagggtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17663475 atttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagcgaagatgaaaccgaattagggtcaa 17663574  T
Q  201 gagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663575 gagttgtcaggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 17663636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 17700604 - 17700343
Alignment:
Q  1 tgataataagaagatgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacg 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17700604 tgataatgagaagatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacg 17700505  T
Q  101 atttttcaaacatcacaagattccaaggaaccagcaggctctaactttgatattgaaggcatgaagaatgttagggaagatgaaaccgaattagggtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  17700504 atttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagctaagatgaaaccgaattagggtcaa 17700405  T
Q  201 gagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  17700404 gagttgtcaggaatgttgatttgaatgagcttccaagtgatgattttgaagatgaaaacaat 17700343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 21899355 - 21899136
Alignment:
Q  43 gtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctct 142  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||| |||||| |||| ||| ||||||| ||||||||| | || ||||    
T  21899355 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacctgtagactct 21899256  T
Q  143 aactttgatattgaaggcatgaagaatgttagggaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatg 242  Q
    |||  |||||||||||||| ||| ||  |||| |||| |||||||||||||||||||||||||     ||||||||||||||||||| || ||||||| |    
T  21899255 aaccatgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatgaattttgatttgaatgagatttcaagtgacg 21899156  T
Q  243 attttgaagatgaaaccaat 262  Q
    ||||||||||||||||||||    
T  21899155 attttgaagatgaaaccaat 21899136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 38227059 - 38226973
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||| |||||| |||| |||||||| ||||||   |||||| |||||||| ||||||||||||||||| ||||||||| ||||||||    
T  38227059 gaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatgagtttgaagataaaaccaat 38226973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 21899692 - 21899653
Alignment:
Q  9 agaagatgaaggaacaaggtgtgctgctaacaaggtgtgt 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21899692 agaagatgaaggaacaaggtgtgctgctaacaaggtgtgt 21899653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 22663746 - 22663678
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgat 244  Q
    |||| ||||||||||||||||||| |||||||   ||| |||||||||||||| ||| |||||||||||    
T  22663746 gaaggtgaaaccgaattagggtcaggagttgttttgaagtttgatttgaatgaactttcaagtgatgat 22663678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 38227203 - 38227135
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgat 244  Q
    |||| |||||| ||||||||||||| ||||||   |||| |||||||||| ||||||||||||||||||    
T  38227203 gaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 22663827 - 22663780
Alignment:
Q  85 gattcctaaagacacgatttttcaaacatcacaagattccaaggaacc 132  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  22663827 gattcctaaagacaagatttttcaaacatcacaaaattgcaaggaacc 22663780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 27777493 - 27777561
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgat 244  Q
    |||| |||||| ||| ||||||||| ||||||   ||||||||||||||| |||||||||||| |||||    
T  27777493 gaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27777561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 27781010 - 27781078
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgat 244  Q
    |||| ||||||  |||||||||||| ||||||   ||||||||||||| | ||||||||||||||||||    
T  27781010 gaaggtgaaacaaaattagggtcaaaagttgtgaagaattttgatttggacgagcttccaagtgatgat 27781078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 27782468 - 27782400
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgat 244  Q
    |||| |||||| ||| ||||||||| ||||||   ||||||||||||||| |||||||||||| |||||    
T  27782468 gaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27782400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 27777597 - 27777648
Alignment:
Q  211 gaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||||| |||||||| ||| || |||||||||||| ||||||||||||||||    
T  27777597 gaatttagatttgaacgagtttacaagtgatgattgtgaagatgaaaccaat 27777648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 27782364 - 27782313
Alignment:
Q  211 gaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||||| |||||||| ||| || |||||||||||| ||||||||||||||||    
T  27782364 gaatttagatttgaacgagttttcaagtgatgattgtgaagatgaaaccaat 27782313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22666856 - 22666782
Alignment:
Q  1 tgataataagaagatgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgct 75  Q
    |||||||  ||||||||||||||||  |||| | |||||||||||||||| ||||||  ||||  ||||||||||    
T  22666856 tgataatgtgaagatgaaggaacaacatgtgatactaacaaggtgtgtttcccacaatcaaaaacacttggtgct 22666782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 38227119 - 38227049
Alignment:
Q  188 gaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaac 258  Q
    ||||||||||||| || |||   ||||||||||||||| || |||||||||||||||  ||||| ||||||    
T  38227119 gaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgataatgaaggtgaaac 38227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 38227275 - 38227193
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaac 258  Q
    |||| |||||| ||||||||||||| ||||||   |||| |||||||||| |||||| ||||||| |||  ||||| ||||||    
T  38227275 gaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagtgacgataatgaaggtgaaac 38227193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 27781084 - 27781117
Alignment:
Q  211 gaattttgatttgaatgagcttccaagtgatgat 244  Q
    ||||||||||||||| ||||||||||||||||||    
T  27781084 gaattttgatttgaacgagcttccaagtgatgat 27781117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 51220189 - 51220016
Alignment:
Q  85 gattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctctaactttgatattgaaggcatgaagaatgttagggaagatgaa 184  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||  |    ||||||   |||||||||||  | |||||   |||  |||  ||||    
T  51220189 gattcctaaagaca-gatttttcaaacatcacaagattgcaaggaacatgactcctctaataatgatattgaagagaagaaga---ttaacgaaagtgaa 51220094  T
Q  185 accgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    || ||||||||||||| ||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51220093 actgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgattttgaagatgaaaccaat 51220016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 51220884 - 51220804
Alignment:
Q  181 tgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaa 261  Q
    |||||| ||||||||||||| | ||||   ||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  51220884 tgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagtgatggttttgaagatgaaaccaa 51220804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 35250246 - 35250160
Alignment:
Q  176 gaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    |||| |||||| ||| | ||||||| ||||||   ||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  35250246 gaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgattttgaagatgaatccaat 35250160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 35250303 - 35250268
Alignment:
Q  218 gatttgaatgagcttccaagtgatgattttgaagat 253  Q
    |||||||| |||||||||||||||||||||||||||    
T  35250303 gatttgaacgagcttccaagtgatgattttgaagat 35250268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 51220484 - 51220535
Alignment:
Q  211 gaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaat 262  Q
    ||||| |||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  51220484 gaattatgattttaatgatcttccaagtgatgcttttgaatatgaaaccaat 51220535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 51219687 - 51219723
Alignment:
Q  224 aatgagcttccaagtgatgattttgaagatgaaacca 260  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  51219687 aatgagcttccaagtgatgtttttgaatatgaaacca 51219723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 441120 - 440914
Alignment:
Q  49 ttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctctaacttt 148  Q
    ||||||||| |||||||| |||| | ||| ||| |  ||||||||||  | ||||||||||||||||||||||| |||||||||  |   ||||||   |    
T  441120 ttgccacaatgaaaagaagttggcgttgaggttcaaaattcctaaaggtaagatttttcaaacatcacaagattgcaaggaacctcctacctctaatcat 441021  T
Q  149 gatattgaaggcatgaagaatgttagggaagatgaaaccgaattagggtcaagagttgtcgggaattttgatttgaatgagcttccaagtgatgattttg 248  Q
    | ||||||||  | || ||   |||  |||| ||  || ||||||||| ||| ||||||   ||||||||||||||| ||||||||||||||||| ||||    
T  441020 ggtattgaagagaagatga---ttaatgaaggtgttactgaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatgactttg 440924  T
Q  249 aagatgaaac 258  Q
    ||||||||||    
T  440923 aagatgaaac 440914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 440839 - 440808
Alignment:
Q  230 cttccaagtgatgattttgaagatgaaaccaa 261  Q
    ||||||||||||||||||||||||||||||||    
T  440839 cttccaagtgatgattttgaagatgaaaccaa 440808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 44989244 - 44989308
Alignment:
Q  51 gccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatca 115  Q
    ||||||| ||||| ||||||||| ||| ||||| || ||||||||||| ||||||||||||||||    
T  44989244 gccacaatgaaaacaacttggtgttgaggttgaagaatcctaaagacaagatttttcaaacatca 44989308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 44989884 - 44989794
Alignment:
Q  67 cttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctctaactttgatattgaa 157  Q
    ||||||||||| | |||  | ||||||||| | |||||||| |||||||||||||| ||||||||| | |||||||||   ||||||||||    
T  44989884 cttggtgctgaggctgaataatcctaaagagaagatttttctaacatcacaagattgcaaggaacctgaaggctctaatcatgatattgaa 44989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44989158 - 44989199
Alignment:
Q  1 tgataataagaagatgaaggaacaaggtgtgctgctaacaag 42  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||    
T  44989158 tgataatgagaagatgaaggagcaaggtgtgttgctaacaag 44989199  T

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