View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_high_77 (Length: 214)

Name: NF19380_high_77
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_high_77
NF19380_high_77
[»] chr3 (1 HSPs)
chr3 (20-173)||(30265520-30265673)
[»] chr4 (2 HSPs)
chr4 (25-170)||(30332950-30333095)
chr4 (56-170)||(33266382-33266495)
[»] chr5 (1 HSPs)
chr5 (39-166)||(13376941-13377069)
[»] chr2 (2 HSPs)
chr2 (35-168)||(4473149-4473282)
chr2 (35-168)||(31840501-31840633)
[»] chr7 (1 HSPs)
chr7 (22-152)||(32135899-32136037)
[»] chr1 (1 HSPs)
chr1 (83-168)||(7054420-7054505)
[»] chr8 (1 HSPs)
chr8 (139-170)||(38587574-38587605)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 30265673 - 30265520
Alignment:
Q  20 gatccctcacataaatgttctccaatgttcttcggggagaatcgttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaa 119  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  30265673 gatccctcacataaatgttctccaatgttcttcgaggagaaccgttctccaacttggcatccatgtcatttcactccaatgggatagaacatagaaacaa 30265574  T
Q  120 gctcttatagcctcaagaacataacatagaacaacattggagttgctctaatat 173  Q
    | |||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  30265573 gttcttatggcctcaagaacatagcatagaacaacattggagttgctctaatat 30265520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 30333095 - 30332950
Alignment:
Q  25 ctcacataaatgttctccaatgttcttcggggagaatcgttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaagctct 124  Q
    ||||||| | |||||| ||||||||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||| |||||||||| ||||||| | |    
T  30333095 ctcacatcagtgttcttcaatgttcttcagggagaaccgttctccaacatggcatccatgtcgttccactccaatggcatagaacataaaaacaagtttt 30332996  T
Q  125 tatagcctcaagaacataacatagaacaacattggagttgctctaa 170  Q
    ||| ||||||||||||||  | ||||||||||||||||||||||||    
T  30332995 tattgcctcaagaacatagtaaagaacaacattggagttgctctaa 30332950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 33266495 - 33266382
Alignment:
Q  56 gagaatcgttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaagctcttatagcctcaagaacataacatagaacaaca 155  Q
    ||||| |||||| ||||||||||| |||||||||||||| | |||  ||| |||||||||||||  ||||||| |||||||| ||| |||||||| | ||    
T  33266495 gagaaccgttcttcaacttagcattcatgtcattccacttcgatgagatataacatagaaacaaattcttataacctcaagagcat-acatagaaaagca 33266397  T
Q  156 ttggagttgctctaa 170  Q
    ||| |||||||||||    
T  33266396 ttgaagttgctctaa 33266382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 13376941 - 13377069
Alignment:
Q  39 ctccaatgttcttcggggagaatc-gttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaagctcttatagcctcaaga 137  Q
    |||||||||||||  ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||| || |||| |||||   ||||||||    
T  13376941 ctccaatgttctttagggagaatccgttctccaacatggcatccatgtcattccactccaatgagatagaacataaaatcaagttcttacgacctcaaga 13377040  T
Q  138 acataacatagaacaacattggagttgct 166  Q
    ||||| |||||||||||||||||||||||    
T  13377041 acatatcatagaacaacattggagttgct 13377069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 4473282 - 4473149
Alignment:
Q  35 tgttctccaatgttcttcggggagaatcgttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaagctcttatagcctca 134  Q
    ||||||||||| |||||| ||||||| ||||||||||| | |||| ||||||||||||||||||||| |||||||||| ||||||| ||| || |||||     
T  4473282 tgttctccaatattcttcagggagaaccgttctccaacatggcattcatgtcattccactccaatgggatagaacataaaaacaagttctcatggcctcc 4473183  T
Q  135 agaacataacatagaacaacattggagttgctct 168  Q
    |||||||  | || || | |||||||||||||||    
T  4473182 agaacatggcgtaaaatagcattggagttgctct 4473149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 31840501 - 31840633
Alignment:
Q  35 tgttctccaatgttcttcggggagaatcgttctccaacttagcatccatgtcattccactccaatggaatagaacatagaaacaagctcttatagcctca 134  Q
    ||||||||||||||||   |||||||   ||||||||| | |||| ||||||||| |||| ||||||| ||||||||| ||||||| ||| ||  |||||    
T  31840501 tgttctccaatgttctctagggagaactattctccaacatggcattcatgtcattacactacaatgga-tagaacataaaaacaagttctcatgccctca 31840599  T
Q  135 agaacataacatagaacaacattggagttgctct 168  Q
    |||||||| ||||||  | || ||||||||||||    
T  31840600 agaacatagcatagataagcaatggagttgctct 31840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 32136037 - 32135899
Alignment:
Q  22 tccctcacataaatgttctccaatgttcttcggggagaatcgttctccaacttagcatccatgtcattccactcca--------atggaatagaacatag 113  Q
    ||||||| || | ||||||  |||||||||| ||||||| |||||||||||||  |||||||||||||||||||||        |||| |||||||||||    
T  32136037 tccctcaaatcagtgttctgaaatgttcttcagggagaaccgttctccaacttgacatccatgtcattccactccaatgaaaatatgggatagaacatag 32135938  T
Q  114 aaacaagctcttatagcctcaagaacataacatagaaca 152  Q
    ||||||| |||||| ||||||| |||||| |||||||||    
T  32135937 aaacaagttcttatggcctcaataacatagcatagaaca 32135899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 7054505 - 7054420
Alignment:
Q  83 tgtcattccactccaatggaatagaacatagaaacaagctcttatagcctcaagaacataacatagaacaacattggagttgctct 168  Q
    ||||||||||||||||||| |||||||||| || |||| ||||||  ||||||||| | | ||||||||| |||||||| ||||||    
T  7054505 tgtcattccactccaatgggatagaacataaaaccaagttcttatgtcctcaagaatagatcatagaacatcattggagatgctct 7054420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 170
Target Start/End: Complemental strand, 38587605 - 38587574
Alignment:
Q  139 cataacatagaacaacattggagttgctctaa 170  Q
    ||||||||||||||||||||||||||||||||    
T  38587605 cataacatagaacaacattggagttgctctaa 38587574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University