View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_high_78 (Length: 212)

Name: NF19380_high_78
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_high_78
NF19380_high_78
[»] chr1 (5 HSPs)
chr1 (86-194)||(50534646-50534754)
chr1 (27-82)||(40119180-40119236)
chr1 (27-81)||(12026156-12026211)
chr1 (27-85)||(11022350-11022409)
chr1 (27-78)||(33051802-33051854)
[»] chr4 (3 HSPs)
chr4 (27-85)||(38645994-38646052)
chr4 (27-85)||(25727624-25727683)
chr4 (27-77)||(2182998-2183049)
[»] scaffold0020 (1 HSPs)
scaffold0020 (27-85)||(133009-133068)
[»] chr6 (2 HSPs)
chr6 (27-85)||(6061792-6061851)
chr6 (13-62)||(19231089-19231138)
[»] chr5 (6 HSPs)
chr5 (27-85)||(40249348-40249407)
chr5 (13-85)||(12676432-12676506)
chr5 (27-85)||(28466638-28466696)
chr5 (27-78)||(28299028-28299080)
chr5 (27-84)||(39057451-39057509)
chr5 (27-78)||(33365507-33365559)
[»] chr8 (2 HSPs)
chr8 (13-77)||(27779330-27779395)
chr8 (27-77)||(12822327-12822378)
[»] chr7 (2 HSPs)
chr7 (27-78)||(47953474-47953526)
chr7 (13-85)||(28711630-28711704)
[»] chr3 (3 HSPs)
chr3 (27-85)||(53220665-53220724)
chr3 (27-77)||(14779125-14779176)
chr3 (27-78)||(55229820-55229871)
[»] chr2 (3 HSPs)
chr2 (27-85)||(27016181-27016240)
chr2 (27-85)||(29160247-29160306)
chr2 (27-85)||(27082227-27082286)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 50534754 - 50534646
Alignment:
Q  86 tcaaagacatcttcaaaatcaagttcagaaaactaggagtccacctgttaatttgtttggactctcaaagtcacactagttaagtcattgttgtgagcca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50534754 tcaaagacatcttcaaaatcaagttcagaaaactaggagtccacctgttaatttgtttggactctcaaagtcacactagttaagtcattgttgtgagcca 50534655  T
Q  186 ccgtcttaa 194  Q
    |||||||||    
T  50534654 ccgtcttaa 50534646  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 40119236 - 40119180
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcccc-ataaattggaggctcgg 82  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  40119236 aacaattatactcatacccctacaaataattgaggcccctataaattggaggctcgg 40119180  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 12026156 - 12026211
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccc-cataaattggaggctcg 81  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12026156 aacaattatactcatacccctacaaataattgaggccctcataaattggaggctcg 12026211  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 11022350 - 11022409
Alignment:
Q  27 aacaattatactcatacccttacaaataattgag-gccccataaattggaggctcggctc 85  Q
    ||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||||    
T  11022350 aacaattatactcatacccctataaataattgagacccccataaattggaggctcggctc 11022409  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 33051854 - 33051802
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcc-ccataaattggaggc 78  Q
    ||||||||||||||||||| || ||| |||||||||| |||||||||||||||    
T  33051854 aacaattatactcatacccctataaaaaattgaggcctccataaattggaggc 33051802  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 38645994 - 38646052
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccccataaattggaggctcggctc 85  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  38645994 aacaattatactcatacccctacaaataattgaacccccataaattggaggctcggctc 38646052  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 25727624 - 25727683
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccc-cataaattggaggctcggctc 85  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  25727624 aacaattatattcatacccttataaataattgaggccctcataaattggaggctcggctc 25727683  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 2183049 - 2182998
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggagg 77  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  2183049 aacaattatactcatacgcctacaaataattgaggcccccataaattggagg 2182998  T

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Target: scaffold0020 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 133068 - 133009
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcccc-ataaattggaggctcggctc 85  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  133068 aacaattatacttatacccatacaaataattgaggcccctataaattggaggctcggctc 133009  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 6061851 - 6061792
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggaggctcggctc 85  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  6061851 aacaattatactcatacccttataaataattgaggcccccataaattggaggcttggctc 6061792  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 19231138 - 19231089
Alignment:
Q  13 attattctacatctaacaattatactcatacccttacaaataattgaggc 62  Q
    ||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  19231138 attattctacattcaacaattatactcgtacccctacaaataattgaggc 19231089  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 40249348 - 40249407
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccc-cataaattggaggctcggctc 85  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  40249348 aacaattatactcatacccctataaataattgaggccctcataaattggaggctcggctc 40249407  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 12676432 - 12676506
Alignment:
Q  13 attattctacatctaa-caattatactcatacccttacaaataattgag-gccccataaattggaggctcggctc 85  Q
    ||||||||||||| || |||||||||| |||||| ||||||||||||||  |||||||||| ||||| |||||||    
T  12676432 attattctacatccaaacaattatacttatacccctacaaataattgagacccccataaatcggaggttcggctc 12676506  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 28466638 - 28466696
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccccataaattggaggctcggctc 85  Q
    ||||||||||| ||||||| |  ||||| |||||||||||||||||||||||| |||||    
T  28466638 aacaattatacgcatacccctgtaaatagttgaggccccataaattggaggctaggctc 28466696  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 28299080 - 28299028
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggaggc 78  Q
    ||||||||||||  ||||| ||||||||||||||| |||||||||||||||||    
T  28299080 aacaattatacttgtacccctacaaataattgaggcccccataaattggaggc 28299028  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 39057451 - 39057509
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcccc-ataaattggaggctcggct 84  Q
    |||||||| |||||||||| || ||||||| |||||||| |||||||||||||| ||||    
T  39057451 aacaattacactcatacccctataaataatagaggcccccataaattggaggcttggct 39057509  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 33365507 - 33365559
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccc-cataaattggaggc 78  Q
    |||||||||||| |||||| ||||||||| |||| ||| ||||||||||||||    
T  33365507 aacaattatacttatacccctacaaataactgagaccctcataaattggaggc 33365559  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 27779330 - 27779395
Alignment:
Q  13 attattctacatc-taacaattatactcatacccttacaaataattgaggccccataaattggagg 77  Q
    ||||| ||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  27779330 attatcctacatcctaaaaattatactcatacccctacaaataatttaggccccataaattggagg 27779395  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 12822378 - 12822327
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcccc-ataaattggagg 77  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  12822378 aacaattatactcatacgcctacaaataattgaggcccctataaattggagg 12822327  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 47953474 - 47953526
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccc-cataaattggaggc 78  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  47953474 aacaattatacttatacccttacaaataattgaggcccgcataaattggaggc 47953526  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 28711704 - 28711630
Alignment:
Q  13 attattctacatct-aacaattatactcatacccttacaaataattgaggcc-ccataaattggaggctcggctc 85  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||  || | |||||||||||| |||||||    
T  28711704 attattctacatcccaacaattatactcatacccctacaaataattgaaacctctataaattggaggttcggctc 28711630  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 53220665 - 53220724
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggaggctcggctc 85  Q
    |||||||||| |||||||| || |||||||||||| ||||||||||||||||||||||||    
T  53220665 aacaattatattcatacccctataaataattgaggcccccataaattggaggctcggctc 53220724  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 14779176 - 14779125
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggagg 77  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  14779176 aacaattatactcatacccctactaataattgaggcccccataaattggagg 14779125  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 55229820 - 55229871
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggccccataaattggaggc 78  Q
    |||||||||||||||| || || |||||||||||| ||||||||||||||||    
T  55229820 aacaattatactcatatccctataaataattgaggacccataaattggaggc 55229871  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 27016240 - 27016181
Alignment:
Q  27 aacaattatactcatacccttacaaataattgagg-ccccataaattggaggctcggctc 85  Q
    ||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||    
T  27016240 aacaattatactcatacccctataaataattaaggcccccataaattggaggctcggctc 27016181  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 29160306 - 29160247
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggc-cccataaattggaggctcggctc 85  Q
    ||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||    
T  29160306 aacaattatactcatacccctacaaataattgagactctcataaattggaggctcggctc 29160247  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 27082286 - 27082227
Alignment:
Q  27 aacaattatactcatacccttacaaataattgaggcccc-ataaattggaggctcggctc 85  Q
    ||||| ||||||||||||| || |||||||| ||||||| ||||||||||||||||||||    
T  27082286 aacaaatatactcatacccctataaataattaaggcccccataaattggaggctcggctc 27082227  T

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