View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_high_79 (Length: 204)
Name: NF19380_high_79
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_79 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 39925072 - 39924941
Alignment:
| Q |
13 |
aatatccatataaattaaagtcaggagcggattcatggaagtaggtacaaacattagttttattataaatgaagtaggtacacatgaacattgtttattc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39925072 |
aatatccatataaattaaagtcaggagcggattcatggaagtaggtacaaacattagttttattataaatgaagtaggtacacatgaacattgtttattc |
39924973 |
T |
|
| Q |
113 |
tttcttaaatatactgcattaaaaaccagcat |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39924972 |
tttcttaaatatactgcattaaaaaccagcat |
39924941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 39924941 - 39924864
Alignment:
| Q |
115 |
tcttaaatatactgcattaaaaaccagcatttttaaagaagg-----atttggatatctaaaagttgacactgtatat |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39924941 |
tcttaaatatactgcattaaaaaccagcatttttaaagaaggatgttatttggatatctaaaagttgacactgtatat |
39924864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University