View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_high_9 (Length: 656)
Name: NF19380_high_9
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_high_9 |
 | |
|
| [»] scaffold0210 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 15 - 637
Target Start/End: Original strand, 2877492 - 2878114
Alignment:
| Q |
15 |
aatatcttgacataatgttggggtatcatgaatcatctcattagattagtttcctatcttagtatttgaagattactttccatattcaattatgatttta |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877492 |
aatatcttgacataatgttggcgtatcatgaatcatctcattagattagtttcctatcttagtatttgaagattactttccatattcaattatgatttta |
2877591 |
T |
|
| Q |
115 |
ggtcttgtatccttataaataagggttagtagtatttagtcttttgtatcatattctcttgactttattattatgattaaagattggttttctctcttga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2877592 |
ggtcttgtatccttataaataagggttagtagtatttagtcttttgtatcgtattctcttgactttattattatgattaaagattagttttctctcttga |
2877691 |
T |
|
| Q |
215 |
cttcaacaattctaaataacttagctttcgaacttagacttgttattcttacttttgaatctaacaaatatttgtagatgttcattgaggaagttatgga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877692 |
cttcaacaattctaaataacttagctttcgaacttagacttgttattcttacttttgaatctaacaaatatttgtagatgttcattgaggaagttatgga |
2877791 |
T |
|
| Q |
315 |
actagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877792 |
actagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaa |
2877891 |
T |
|
| Q |
415 |
ttagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877892 |
ttagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttg |
2877991 |
T |
|
| Q |
515 |
acacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataatataatgaaatcaacatgttt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877992 |
acacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaaataatataatgaaatcaacatgttt |
2878091 |
T |
|
| Q |
615 |
atgaaaatttctttgctcatgtg |
637 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2878092 |
atgaaaatttctttgctcatgtg |
2878114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 264 - 591
Target Start/End: Original strand, 2887264 - 2887591
Alignment:
| Q |
264 |
tacttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggt |
363 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||| ||||| | ||||||||||||||| |
|
|
| T |
2887264 |
tacttttggatctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggt |
2887363 |
T |
|
| Q |
364 |
gtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggat |
463 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2887364 |
gtgaatggtctttcaaccgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggat |
2887463 |
T |
|
| Q |
464 |
tagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacat |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2887464 |
tagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacat |
2887563 |
T |
|
| Q |
564 |
atttgaatcttttgatgaggtaagaaat |
591 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
2887564 |
attcgaagcttttgatgaggtaagaaat |
2887591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 264 - 591
Target Start/End: Complemental strand, 2897090 - 2896763
Alignment:
| Q |
264 |
tacttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggt |
363 |
Q |
| |
|
|||||| |||||| | |||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| |||| ||||| | ||||||||||||||| |
|
|
| T |
2897090 |
tactttggaatctgataaatggttgtagatgttcatcgaggaagtcatggaactagtggagctcaatccattgagaaactctttggttggtttgcctggt |
2896991 |
T |
|
| Q |
364 |
gtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggat |
463 |
Q |
| |
|
|||| || |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2896990 |
gtgaatggcctttcaactgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggat |
2896891 |
T |
|
| Q |
464 |
tagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacat |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2896890 |
tagatgctagagctgctgcaattgttatgcgaacagttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacat |
2896791 |
T |
|
| Q |
564 |
atttgaatcttttgatgaggtaagaaat |
591 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
2896790 |
attcgaagcttttgatgaggtaagaaat |
2896763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 51049755 - 51049808
Alignment:
| Q |
532 |
gtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
585 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
51049755 |
gtttgcaccatacatcaaccaagtatcgatatatttgagacttttgatgaggta |
51049808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 53668666 - 53668549
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || || ||||| || |||||| | ||||| ||||| || || ||||| |||||||| || || || | |
|
|
| T |
53668666 |
gatgctagagccgctgctattgtgatgcgaactgtgagaaacacagtagacacatggagaacggttgtgtgcacaattcaccaaccaagcattgatattt |
53668567 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
53668566 |
tttaagcttttgatgagg |
53668549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 51049647 - 51049717
Alignment:
| Q |
424 |
aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcg |
494 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| || || |||||| ||||||||||| | |||||||| |
|
|
| T |
51049647 |
aatccatcgataatttttatggatgaacctacatcaggtttggatgctcgagctgctgcagtagttatgcg |
51049717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 290 - 585
Target Start/End: Complemental strand, 44223047 - 44222752
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||| |||||||| || |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| || |
|
|
| T |
44223047 |
agatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaacagcg |
44222948 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
|||||| | |||||| |||| ||| | ||||| |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
44222947 |
caagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgtt |
44222848 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
585 |
Q |
| |
|
|||||||| || |||||||| || ||||| |||||||||||||| |||||||| |||||||| || || |||||||||||| | |||||||||||| |
|
|
| T |
44222847 |
atgcgaactgtaaggaacacagtggacacgggaagaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgatgaggta |
44222752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 267 - 585
Target Start/End: Complemental strand, 44210870 - 44210552
Alignment:
| Q |
267 |
ttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtg |
366 |
Q |
| |
|
||||||| |||||||| ||| ||||||| ||||||||||| ||||| || || |||||||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
44210870 |
ttttgaacataacaaatgcttgcagatgtttattgaggaagtaatggatcttgtggagctgaactcgttgagggactccctcgttggtttgcctggtgtt |
44210771 |
T |
|
| Q |
367 |
agcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattag |
466 |
Q |
| |
|
|| ||||| ||||| |||||||| || ||||| |||||| |||||||| ||||||| ||||| ||||||||||||||||| || || || ||||| |||| |
|
|
| T |
44210770 |
agtggtctctcaacggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaacttctggtttag |
44210671 |
T |
|
| Q |
467 |
atgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatt |
566 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||| || |||||||||||||||||||| |||||||| |||||||| || || |||||||| |
|
|
| T |
44210670 |
atgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcaacctagcattgacatatt |
44210571 |
T |
|
| Q |
567 |
tgaatcttttgatgaggta |
585 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
44210570 |
tgaagcatttgatgaggta |
44210552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 290 - 585
Target Start/End: Complemental strand, 44233869 - 44233574
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||| |||||||| | |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| || |
|
|
| T |
44233869 |
agatgtttattgacgaagtcatggatctagtggagctgaactcattgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaacagcg |
44233770 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
|||||| | |||||| |||||||| | ||||| |||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
44233769 |
caagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctacttctggtttagatgctagagctgctgcaattgtt |
44233670 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
585 |
Q |
| |
|
||| |||| || |||||||| || |||||||||||||||||||| |||||||| ||||| || || || |||||||||||| | |||||||||||| |
|
|
| T |
44233669 |
atgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcagcctagcattgacatatttgaagcatttgatgaggta |
44233574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 570
Target Start/End: Complemental strand, 43457041 - 43456937
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||| |||||||| |||||||||||| | || || || ||||| |||||||| |||||||||||||| || || ||||| || || |||||||| || | |
|
|
| T |
43457041 |
gatgcaagagctgcagcaattgttatgaggacagtgagaaacactgttgacactggaagaacagttgtctgcacaattcaccagcctagtatcgatatct |
43456942 |
T |
|
| Q |
566 |
ttgaa |
570 |
Q |
| |
|
||||| |
|
|
| T |
43456941 |
ttgaa |
43456937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 290 - 584
Target Start/End: Complemental strand, 39537907 - 39537613
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||||||||| ||||| |||||||| || || ||||| || ||| ||||| || |||| || | |||||||| ||| |||| ||||| || || || |
|
|
| T |
39537907 |
agatgttcattgaagaagtcatggaacttgtggaactgaaaccactgcggaacgcattagtaggactacctggtgttagcagtctctcaacggagcagcg |
39537808 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| ||| | |||||| ||||||| || || || ||||| || ||||| |||||||| ||||| || |||||| | ||||| || ||||| || |||||| |
|
|
| T |
39537807 |
caaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctattgtt |
39537708 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
||| |||| ||||||||||| || ||||| |||||||||||||||||||||||||| ||||| || || || ||||||||||||||||||||||| |
|
|
| T |
39537707 |
atgagaacagttaggaacacagtagacactggaagaacagttgtttgtaccattcaccaacctagcattgatatatttgaatcttttgatgaggt |
39537613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 286 - 584
Target Start/End: Complemental strand, 39547376 - 39547078
Alignment:
| Q |
286 |
ttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaac |
385 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || || ||||| || ||| ||| || |||| || | |||||||| |||||||| ||||| || | |
|
|
| T |
39547376 |
ttgtagatgttcattgaggaagtaatggaacttgtggaactgaaaccactgcaaaacgcaatagtaggactacctggtgttagcggtctctcaacggagc |
39547277 |
T |
|
| Q |
386 |
aacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaat |
485 |
Q |
| |
|
| ||||| ||| | |||||| ||||||| || || || ||||| || ||||| |||||||| ||||| || |||||| | ||||| |||||||| || || |
|
|
| T |
39547276 |
agcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagagctgcagctat |
39547177 |
T |
|
| Q |
486 |
tgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
||||||| |||| ||||||||||| || ||||| ||||||||||||||||||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
39547176 |
tgttatgagaacagttaggaacacagtagacaccggaagaacagttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39547078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 290 - 593
Target Start/End: Original strand, 39338949 - 39339252
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||||||||||||||| |||||||| || || ||||| || ||| ||| || |||| || | |||||||| |||||||| ||||| || || || |
|
|
| T |
39338949 |
agatgttcattgaggaagtcatggaacttgtggaactgaaaccactgcaaaacgcaatagtaggactacctggtgttagcggtctctcaacggagcagcg |
39339048 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| ||| | ||| || ||||||| || || || ||||| || ||||| |||||||| ||||| || ||||| ||||||| || ||||| || |||||| |
|
|
| T |
39339049 |
caaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgagccaacttctgggctagatgcaagggctgcagctattgtt |
39339148 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaa |
589 |
Q |
| |
|
||| |||| ||||||||||| || ||||| |||||||||||||||||||| || || || || || || || ||||||||||||||||||||||| | || |
|
|
| T |
39339149 |
atgagaacagttaggaacacagtagacactggaagaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggtgaaaa |
39339248 |
T |
|
| Q |
590 |
ataa |
593 |
Q |
| |
|
|||| |
|
|
| T |
39339249 |
ataa |
39339252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 290 - 584
Target Start/End: Original strand, 39366372 - 39366666
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||| ||||||||||| |||||||| || || ||||| ||||| | | || |||| || |||||||||| || ||||| || || || || || |
|
|
| T |
39366372 |
agatgtttattgaggaagtcatggaacttgtggaactgaaaccgctacgatatgcattagtaggactgcctggtgttagtggtctctcgacagagcagcg |
39366471 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| ||| ||||| || |||||||||| || || ||||| || ||||| |||||||| ||||| || ||||| ||||||| || ||||| || || || |
|
|
| T |
39366472 |
caaaaggctaactgttgcagttgaattggtagctaatccttcaataatattcatggatgagccaacttctgggctagatgcgagggctgcagctatagtg |
39366571 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
||| || | ||||||||||| |||||||| |||||||| |||||||||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
39366572 |
atgagagcagttaggaacacagttgacaccggaagaactgttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39366666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 586
Target Start/End: Complemental strand, 39589085 - 39588789
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||||| || ||||| ||| | || | || || ||||| || || || ||||| || || || ||||| |
|
|
| T |
39589085 |
agatgttcattgaggaagtcatggagcttgtggagctaaacccgcttagggatgcaattgtcggattgccaggggttagtggtctatcgacggagcaacg |
39588986 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| ||||| || || ||||||| |||||||| ||||| || ||||| |||||||| ||||| || || || ||||||| || ||||| | |||||| |
|
|
| T |
39588985 |
caaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagccaacttcggggctagatgcaagggctgcatctattgtt |
39588886 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaa |
586 |
Q |
| |
|
||| || | ||||| |||| || ||||||||||||||| ||||||||||||||||||| || || || | ||||||||||||||||| ||||||| |
|
|
| T |
39588885 |
atgagagcagttagaaacatagtggacacaggaagaacaattgtttgtaccattcatcagcccagcattcatatatttgaatcttttgacgaggtaa |
39588789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 584
Target Start/End: Complemental strand, 1084710 - 1084415
Alignment:
| Q |
289 |
tagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaac |
388 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || ||||| | || | ||| || |||| || | |||||||| ||| |||| ||||| || | | |
|
|
| T |
1084710 |
tagatgttcattgaggaagtcatggaacttgtggaactgaaatcagtgcgaaacgcattagtaggactacctggtgttagcagtctctcaacagagtagc |
1084611 |
T |
|
| Q |
389 |
gcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgt |
488 |
Q |
| |
|
||| ||| | |||||| ||||||| || || | ||||| || ||||| || ||||| ||||| || ||||| ||||||| | || || || ||||| |
|
|
| T |
1084610 |
acaaaaggctgactattgcagttgagttggtttctaatccttctataatatttatggatgagccaacttctgggctagatgcaatggcagcagcgattgt |
1084511 |
T |
|
| Q |
489 |
tatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
|||| |||| ||||||| ||| || ||||| |||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1084510 |
tatgagaacagttaggagcacagtagacactggaagaactgttgtttgcaccatccatcaaccaagtattgatatatttgaatcttttgatgaggt |
1084415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 42153667 - 42153550
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| || || || || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| | |
|
|
| T |
42153667 |
gatgctagagccgctgcaatcgttatgcgaaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagtatagacattt |
42153568 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
42153567 |
ttgaagcttttgatgagg |
42153550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 290 - 593
Target Start/End: Original strand, 39353792 - 39354095
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
|||||||| |||||||||| |||||||| || || ||||| || ||| | || || |||| || | |||||||| ||||||| |||| || || || |
|
|
| T |
39353792 |
agatgttcgttgaggaagtcatggaacttgtggaactgaaaccactgcgaaatgcattagtaggacttcctggtgtttgcggtctctcaatggagcagcg |
39353891 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| ||| | ||| || ||||||| || || || ||||| || ||||| |||||||| || || || ||||| ||||||| || ||||| ||| |||| |
|
|
| T |
39353892 |
caaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagcagttgtg |
39353991 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaagaa |
589 |
Q |
| |
|
||| |||| ||||| ||||| || || ||||||||||||||||||||||| || || || || || || || ||||||||||||||||||||||| | || |
|
|
| T |
39353992 |
atgagaacagttagaaacacagtagatacaggaagaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggtgaaaa |
39354091 |
T |
|
| Q |
590 |
ataa |
593 |
Q |
| |
|
|||| |
|
|
| T |
39354092 |
ataa |
39354095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 584
Target Start/End: Complemental strand, 39564003 - 39563709
Alignment:
| Q |
290 |
agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg |
389 |
Q |
| |
|
|||||||| |||||||||| |||||||| || || ||||| || ||| ||| || |||| || |||||||||| | ||||| || || || || || |
|
|
| T |
39564003 |
agatgttcgttgaggaagtcatggaacttgtggaactgaaaccactgcaaaacgcattagtaggactgcctggtgttaatggtctctcgacggagcagcg |
39563904 |
T |
|
| Q |
390 |
caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt |
489 |
Q |
| |
|
||| |||| || ||| ||||||| || || || ||||| || ||||| |||||||| || || || ||||| ||||||| || ||||| || ||||| |
|
|
| T |
39563903 |
caaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtg |
39563804 |
T |
|
| Q |
490 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
||| |||| ||||||||||| || |||| |||||||||||||||||||| || || || || || || || ||||||||||||||||||||||| |
|
|
| T |
39563803 |
atgagaacagttaggaacacagtaaacactggaagaacagttgtttgtactatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 42141865 - 42141748
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| || || || || || ||||| ||||| |||||||| || ||||||||||||||||| ||||| | |
|
|
| T |
42141865 |
gatgctagagccgctgcaatcgttatgcggaccgtgagaaatacagtggatacagggagaactgttgtttgcacaattcatcaaccaagtatagacattt |
42141766 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
42141765 |
ttgaagcttttgatgagg |
42141748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 586
Target Start/End: Complemental strand, 39574468 - 39574321
Alignment:
| Q |
439 |
ttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgta |
538 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||| |||||||| || ||||||||| || | |||||||||| || ||||| ||||||||| |||| |||| |
|
|
| T |
39574468 |
ttcatggatgagccaacttctgggttagatgcaagagctgcagctattgttatgagagcagttaggaacatagtggacactggaagaacaattgtgtgta |
39574369 |
T |
|
| Q |
539 |
ccattcatcaaccaagtatcgacatatttgaatcttttgatgaggtaa |
586 |
Q |
| |
|
||||||| || || || || || || ||||||||||| |||||||||| |
|
|
| T |
39574368 |
ccattcaccagcccagcattgatatctttgaatctttcgatgaggtaa |
39574321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 42132696 - 42132579
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || || ||||| || |||||||| ||||| ||||| || || ||||| |||||||| || || || | |
|
|
| T |
42132696 |
gatgctagagccgctgccattgtgatgcgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt |
42132597 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
42132596 |
ttgaagcttttgatgagg |
42132579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 42171505 - 42171388
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| || || || || || ||||| ||||| |||||||| || |||||||||||||| | || || | |
|
|
| T |
42171505 |
gatgctagagccgctgctattgttatgcggaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagcacggatattt |
42171406 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
42171405 |
ttgaagcttttgatgagg |
42171388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 39621848 - 39621658
Alignment:
| Q |
394 |
aggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgc |
493 |
Q |
| |
|
||||| |||||| | || || |||||||| ||||| || ||||| |||||||| ||||| || || || ||||||| ||| ||| || ||||||||| |
|
|
| T |
39621848 |
aggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaagatctgtcgctattgttatga |
39621749 |
T |
|
| Q |
494 |
gaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
|| || |||| || | || || | |||||||| ||||| ||| ||||||||||| ||| ||| || ||||||||||||||||||||||| |
|
|
| T |
39621748 |
gagccattagaaatatagtggagaatggaagaactgttgtctgtgccattcatcaatcaaatattgatatatttgaatcttttgatgaggt |
39621658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 373 - 591
Target Start/End: Complemental strand, 2160434 - 2160216
Alignment:
| Q |
373 |
ctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgcta |
472 |
Q |
| |
|
||||| ||||||||||||||||| |||| || |||||||| | || || |||||||| ||||| |||||||| ||||| || ||||| | ||||||| |
|
|
| T |
2160434 |
ctttcgaccgaacaacgcaagagactaacgatcgcagttgaacttgtagcgaatccatcgataatattcatggatgagccaacctctggccttgatgcta |
2160335 |
T |
|
| Q |
473 |
gagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatc |
572 |
Q |
| |
|
|||| ||||||||||| ||| |||| || |||||||| |||||||||||| | || |||||||| || || ||||| |||||||| |||||||| || | |
|
|
| T |
2160334 |
gagcagctgcaattgtaatgagaacagtgaggaacacagttgacacaggacgtactgttgtttgcacaatccatcagccaagtattgacatattcgacgc |
2160235 |
T |
|
| Q |
573 |
ttttgatgaggtaagaaat |
591 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2160234 |
ctttgatgaggtaacaaat |
2160216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 373 - 586
Target Start/End: Complemental strand, 2148606 - 2148393
Alignment:
| Q |
373 |
ctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgcta |
472 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||||| | || || |||||||| ||||| |||||||| || || || ||||| | |||||| |
|
|
| T |
2148606 |
ctttcaaccgaacagcgcaagagacttactattgcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctc |
2148507 |
T |
|
| Q |
473 |
gagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatc |
572 |
Q |
| |
|
|||| ||||| ||||| |||||||| || |||||||| || ||||||||| | || || || || || || ||||| || ||||| ||||||||||| || |
|
|
| T |
2148506 |
gagcagctgcgattgtaatgcgaacagtaaggaacactgtggacacaggacgtaccgtggtgtgcacgatccatcagccgagtattgacatatttgattc |
2148407 |
T |
|
| Q |
573 |
ttttgatgaggtaa |
586 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2148406 |
ctttgatgaggtaa |
2148393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 586
Target Start/End: Original strand, 19543262 - 19543382
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
|||||||||||||| ||| | |||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || || | |
|
|
| T |
19543262 |
gatgctagagctgcagcagtagttatgcgtactgttagaaacacagttgatacagggagaactgttgtgtgcacaattcatcaaccaagtattgatattt |
19543361 |
T |
|
| Q |
566 |
ttgaatcttttgatgaggtaa |
586 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
19543362 |
ttgaaaattttgatgaggtaa |
19543382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 41687323 - 41687150
Alignment:
| Q |
412 |
gaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacgg |
511 |
Q |
| |
|
||||| || |||||||| || || || || ||||| ||||||||||| || | ||||| |||||||| |||||||||||||| || || || || || | |
|
|
| T |
41687323 |
gaattggttgccaatccttcaatcatctttatggatgagcctacatcaggccttgatgccagagctgcagcaattgttatgcgtactgtcagaaatacag |
41687224 |
T |
|
| Q |
512 |
ttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
585 |
Q |
| |
|
|| ||||| ||||| || || || || ||||| |||||||| || || |||||||||||||||||||||||| |
|
|
| T |
41687223 |
cggatacagggagaactgtggtctgcacaattcaccaaccaagcattgatatatttgaatcttttgatgaggta |
41687150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 587
Target Start/End: Complemental strand, 25986741 - 25986620
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| |||||||| || || || | |
|
|
| T |
25986741 |
gatgctagagccgctgctattgagatgcgaactgtgagaaacacggtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt |
25986642 |
T |
|
| Q |
566 |
ttgaatcttttgatgaggtaag |
587 |
Q |
| |
|
|| || ||||||||||| |||| |
|
|
| T |
25986641 |
tttaagcttttgatgagataag |
25986620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 584
Target Start/End: Original strand, 49773508 - 49773743
Alignment:
| Q |
349 |
gttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacg |
448 |
Q |
| |
|
||||| || |||||||||| ||||| || || ||||| |||||||||||||| ||| |||||||| | || ||||||||||| || || |||||||| | |
|
|
| T |
49773508 |
gttggattacctggtgtgaatggtctgtccacagaacagcgcaagaggttaacgattgcagttgaacttgttgccaatccatctattatattcatggatg |
49773607 |
T |
|
| Q |
449 |
agcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatca |
548 |
Q |
| |
|
| ||||| ||||| | ||||| ||||||||||| || || ||| |||| || ||||| || || |||||||| ||||| ||||| || || |||||||| |
|
|
| T |
49773608 |
aacctacctctggccttgatgcaagagctgctgctatagtaatgagaacagtgaggaatacagtggacacagggagaactgttgtctgcacaattcatca |
49773707 |
T |
|
| Q |
549 |
accaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
|| ||||| || |||||||| ||||||||||||| |
|
|
| T |
49773708 |
gcctagtattgatatatttgatgcttttgatgaggt |
49773743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 584
Target Start/End: Complemental strand, 25522972 - 25522821
Alignment:
| Q |
433 |
ataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttg |
532 |
Q |
| |
|
||||| |||||||| || ||||| || ||| | ||||| | || ||||| ||||||||| |||| ||| | || || ||||| || |||||||| || | |
|
|
| T |
25522972 |
ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgttgatactggaagaactgtgg |
25522873 |
T |
|
| Q |
533 |
tttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt |
584 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||||| | ||||||||||| |
|
|
| T |
25522872 |
tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt |
25522821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 583
Target Start/End: Complemental strand, 12717123 - 12717006
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| || || ||||| || |||||||| ||||| ||||| || || ||||| |||||||| || || || | |
|
|
| T |
12717123 |
gatgctagagccgctgctattgtgatgtgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt |
12717024 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
12717023 |
tttaagcttttgatgagg |
12717006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 430 - 581
Target Start/End: Original strand, 29777435 - 29777586
Alignment:
| Q |
430 |
tccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacag |
529 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| | |||||| | || || || || ||||||||||| ||| | ||||| ||||| || |||||||| | |
|
|
| T |
29777435 |
tccattatttttatggacgagcctacatctggacttgatgctcgtgccgcagctatcgttatgcgaactgttcgcaacactgttgatactggaagaactg |
29777534 |
T |
|
| Q |
530 |
ttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatga |
581 |
Q |
| |
|
|||| |||||||| |||||||||||||| || || |||||| | |||||||| |
|
|
| T |
29777535 |
ttgtctgtaccatacatcaaccaagtattgatatttttgaagcatttgatga |
29777586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 439 - 585
Target Start/End: Original strand, 4501718 - 4501864
Alignment:
| Q |
439 |
ttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgta |
538 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||| ||||| ||||| ||||||||| | || || || ||||| ||||| || |||||||||||||| || | |
|
|
| T |
4501718 |
ttcatggatgagccaacttctggtctagatgcaagagcagctgctattgttatgaggactgtaagaaacactgttgatactggaagaacagttgtgtgca |
4501817 |
T |
|
| Q |
539 |
ccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
585 |
Q |
| |
|
| ||||||||||| || || || || |||||| | |||||||||||| |
|
|
| T |
4501818 |
caattcatcaacctagcattgatatctttgaagcctttgatgaggta |
4501864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 553
Target Start/End: Original strand, 43530787 - 43530874
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaa |
553 |
Q |
| |
|
|||||||||||||| ||| | |||||||| || ||||| ||||| |||| ||||| ||||| ||||| || || ||||||||||||| |
|
|
| T |
43530787 |
gatgctagagctgcagcagtagttatgcgtactgttagaaacacagttgttacagggagaactgttgtgtgcacaattcatcaaccaa |
43530874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 583
Target Start/End: Original strand, 8802 - 8919
Alignment:
| Q |
466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatat |
565 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || || ||||| || |||||||| |||| ||||| || || ||||| ||||||||||| || || | |
|
|
| T |
8802 |
gatgctagagctgctgctattgtgatgcgaactgtgagaaacacagtagacacagggagaaatgttgtgtgcacaattcaccaaccaagtattgatattt |
8901 |
T |
|
| Q |
566 |
ttgaatcttttgatgagg |
583 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
8902 |
tttaagcttttgatgagg |
8919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 583
Target Start/End: Complemental strand, 10901823 - 10901718
Alignment:
| Q |
478 |
gctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttg |
577 |
Q |
| |
|
||||| ||||| ||| |||| || || ||||| || |||||||||||||| ||||| || || ||||| |||||||| || || || ||| || |||||| |
|
|
| T |
10901823 |
gctgctattgtgatgtgaactgtgagaaacacagtagacacaggaagaactgttgtgtgcacaattcaccaaccaagcattgatattttttaagcttttg |
10901724 |
T |
|
| Q |
578 |
atgagg |
583 |
Q |
| |
|
|||||| |
|
|
| T |
10901723 |
atgagg |
10901718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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