View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_11 (Length: 621)

Name: NF19380_low_11
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_11
NF19380_low_11
[»] chr6 (7 HSPs)
chr6 (1-606)||(34670951-34671564)
chr6 (318-380)||(31461585-31461647)
chr6 (223-285)||(34633335-34633397)
chr6 (305-418)||(10657145-10657258)
chr6 (285-325)||(34633258-34633298)
chr6 (355-429)||(33826787-33826861)
chr6 (327-387)||(31668779-31668839)
[»] chr2 (18 HSPs)
chr2 (1-606)||(26964749-26965362)
chr2 (223-285)||(26857320-26857382)
chr2 (327-393)||(38239639-38239705)
chr2 (354-423)||(39621896-39621963)
chr2 (327-369)||(43965242-43965284)
chr2 (335-420)||(35329880-35329965)
chr2 (305-385)||(626307-626387)
chr2 (333-393)||(10143094-10143154)
chr2 (360-498)||(26857085-26857231)
chr2 (285-332)||(26857236-26857283)
chr2 (350-393)||(43259773-43259816)
chr2 (355-393)||(787275-787313)
chr2 (343-396)||(5045242-5045295)
chr2 (327-372)||(35755611-35755656)
chr2 (334-374)||(9478222-9478262)
chr2 (329-393)||(17952789-17952853)
chr2 (359-423)||(41407023-41407087)
chr2 (310-393)||(43530199-43530283)
[»] chr7 (5 HSPs)
chr7 (305-419)||(425886-425998)
chr7 (334-380)||(2223071-2223117)
chr7 (318-380)||(22388005-22388067)
chr7 (318-423)||(39169473-39169578)
chr7 (333-377)||(47941242-47941286)
[»] chr4 (4 HSPs)
chr4 (307-385)||(42641729-42641808)
chr4 (343-393)||(51044547-51044597)
chr4 (328-393)||(47970235-47970300)
chr4 (318-374)||(7205917-7205973)
[»] chr1 (5 HSPs)
chr1 (344-393)||(4699700-4699749)
chr1 (332-383)||(45975861-45975912)
chr1 (328-393)||(870962-871027)
chr1 (356-397)||(24702206-24702247)
chr1 (328-380)||(29046014-29046066)
[»] chr5 (5 HSPs)
chr5 (343-423)||(18857458-18857538)
chr5 (334-393)||(912737-912796)
chr5 (327-385)||(10391269-10391327)
chr5 (356-396)||(28578837-28578877)
chr5 (341-393)||(35135750-35135802)
[»] chr8 (1 HSPs)
chr8 (354-393)||(926430-926469)
[»] scaffold0654 (1 HSPs)
scaffold0654 (327-393)||(6725-6791)
[»] scaffold0014 (1 HSPs)
scaffold0014 (327-393)||(116644-116710)
[»] chr3 (4 HSPs)
chr3 (354-396)||(34958271-34958313)
chr3 (327-393)||(38462197-38462263)
chr3 (320-393)||(51278245-51278318)
chr3 (357-393)||(41155142-41155178)
[»] scaffold0590 (1 HSPs)
scaffold0590 (336-393)||(1162-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (336-393)||(2756-2813)
[»] scaffold0022 (1 HSPs)
scaffold0022 (334-419)||(143124-143208)


Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 34671564 - 34670951
Alignment:
Q  1 aggtgaaaaattgctttggannnnnnnngtggatcatttgattttgacctaattttgtgctcatgagagagtgatttaattagttgttcttgagttaagt 100  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671564 aggtgaaaaattgctttggattttttttgtggatcatttgattttgacctaattttgtgctcatgagagagtgatttaattagttgttcttgagttaagt 34671465  T
Q  101 gatgagtgtgtgtg------cagtttagaacttaattttgtagcttataaaataagttattttattaggttcttgatttgttgctttataatgattgttg 194  Q
    ||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671464 gatgagtgtgtgtgtgtgtgcagtttagaacttaattttgtagcttataaaataagttattttattaggttcttgatttgttgctttataatgattgttg 34671365  T
Q  195 tattgcttaatatttttgtaacttaaattgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttgctattaggg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671364 tattgcttaatatttttgtaacttaaattgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttgctattaggg 34671265  T
Q  295 gattgtttggaacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaag 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671264 gattgtttggaacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaag 34671165  T
Q  395 cttcgtttgcataatctataagctgtttttgtaagccatttggagagcttctaagctggaaatagtttctaaaatgtcatcagttgttttcataagtttt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671164 cttcgtttgcataatctataagctgtttttgtaagccatttggagagcttctaagctggaaatagtttctaaaatgtcatcagttgttttcataagtttt 34671065  T
Q  495 cccatagaagctcaaataagcaagaatccaaaagag--agttggaaaacaatgtgtgttggagaaggatttagaataagaaatgaaaagaaaatcaatga 592  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34671064 cccatagaagctcaaataagcaagaatccaaaagagacagttggaaaacaatgtgtgttggagaaggatttagaataagaaatgaaaagaaaatcaatga 34670965  T
Q  593 atgactttgttaat 606  Q
    ||||||||||||||    
T  34670964 atgactttgttaat 34670951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 31461585 - 31461647
Alignment:
Q  318 gcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagat 380  Q
    |||||||  |||||||||||| ||||||||| ||| | ||||||||||||||||||| |||||    
T  31461585 gcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagat 31461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 34633397 - 34633335
Alignment:
Q  223 tgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttg 285  Q
    |||||||||| ||| |||||||| |||||||||||||||||   || ||||||||||||||||    
T  34633397 tgattgttgtgttgcttagagaaagattttagattgtttatggcacctagttttgattagttg 34633335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 418
Target Start/End: Original strand, 10657145 - 10657258
Alignment:
Q  305 aacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgc 404  Q
    ||||||||||||||| ||||  |||| || | ||| ||||||   |||||||||||||| |||||||| || |||| |||| ||||||| || | || ||    
T  10657145 aacttattttgcagcatatagcataaacaataatcatataagcacttacgaataagctacttctataagacgagataaaataaagtcaaactgctttcgc 10657244  T
Q  405 ataatctataagct 418  Q
    |||||| |||||||    
T  10657245 ataatcaataagct 10657258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 34633298 - 34633258
Alignment:
Q  285 gctattaggggattgtttggaacttattttgcagcttataa 325  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  34633298 gctatcaggggcttgtttggaacttattttgcagcttataa 34633258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 33826861 - 33826787
Alignment:
Q  355 aataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgtttttgtaag 429  Q
    |||||||||||| ||||||| |||||||||| ||||||| ||   |||| ||||| ||||||| |||||| ||||    
T  33826861 aataagctatttatataacagaagattaaataaagtcaaactgtttttgtataatatataagcagtttttataag 33826787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 31668839 - 31668779
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaatta 387  Q
    ||||||| ||||| |||||||| ||| | ||||||||||||||||||| || || ||||||    
T  31668839 ataagcaattatcatataagtgcttatgtataagctatttctataacaaaacataaaatta 31668779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 26965362 - 26964749
Alignment:
Q  1 aggtgaaaaattgctttggannnnnnnngtggatcatttgattttgacctaattttgtgctcatgagagagtgatttaattagttgttcttgagttaagt 100  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26965362 aggtgaaaaattgctttggattttttttgtggatcatttgattttgacctaattttgtgctcatgagagagtgatttaattagttgttcttgagttaagt 26965263  T
Q  101 gatgagtgtgtgtg------cagtttagaacttaattttgtagcttataaaataagttattttattaggttcttgatttgttgctttataatgattgttg 194  Q
    ||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26965262 gatgagtgtgtgtgtgtgtgcagtttagaacttaattttgtagcttataaaataagttattttattaggttcttgatttgttgctttataatgattgttg 26965163  T
Q  195 tattgcttaatatttttgtaacttaaattgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttgctattaggg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26965162 tattgcttaatatttttgtaacttaaattgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttgctattaggg 26965063  T
Q  295 gattgtttggaacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaag 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26965062 gattgtttggaacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaag 26964963  T
Q  395 cttcgtttgcataatctataagctgtttttgtaagccatttggagagcttctaagctggaaatagtttctaaaatgtcatcagttgttttcataagtttt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964962 cttcgtttgcataatctataagctgtttttgtaagccatttggagagcttctaagctggaaatagtttctaaaatgtcatcagttgttttcataagtttt 26964863  T
Q  495 cccatagaagctcaaataagcaagaatccaaaagag--agttggaaaacaatgtgtgttggagaaggatttagaataagaaatgaaaagaaaatcaatga 592  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964862 cccatagaagctcaaataagcaagaatccaaaagagacagttggaaaacaatgtgtgttggagaaggatttagaataagaaatgaaaagaaaatcaatga 26964763  T
Q  593 atgactttgttaat 606  Q
    ||||||||||||||    
T  26964762 atgactttgttaat 26964749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 26857382 - 26857320
Alignment:
Q  223 tgattgttgtattgattagagaatgattttagattgtttatcttacttagttttgattagttg 285  Q
    |||||||||| ||| |||||||||||||||||||||||||  | || ||||||||||||||||    
T  26857382 tgattgttgtgttgcttagagaatgattttagattgtttacgtcacctagttttgattagttg 26857320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 38239705 - 38239639
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||||||| ||| | |||||||||| | ||||||||||||||||||| ||||| |||| |||||||    
T  38239705 ataagcactcatcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagtcaa 38239639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 39621896 - 39621963
Alignment:
Q  354 gaataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgtttt 423  Q
    ||||||| |||||||||||||||| || |||| ||||||| |||  |||| |||||||||||||||||||    
T  39621896 gaataagatatttctataacacaaaataaaataaagtcaaactt--tttgtataatctataagctgtttt 39621963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 43965284 - 43965242
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttcta 369  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  43965284 ataagcacttatcatataagtgtttatgaataagctatttcta 43965242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 35329965 - 35329880
Alignment:
Q  335 ttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgt 420  Q
    ||||| |||||||||||| | |||| ||||||| |||||| ||||| |||| |||||||||| | ||  ||||| |||||||||||    
T  35329965 ttatcatataagtgtttatgcataaactatttccataacataagataaaataaagtcaagctgctttcacataagctataagctgt 35329880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 626387 - 626307
Alignment:
Q  305 aacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaat 385  Q
    ||||||||||| |||||||   || ||| |||||| | |||||| ||| |||||||||||||||| |||||||||| ||||    
T  626387 aacttattttgtagcttattgtattagcgcttatcttgtaagtggttatgaataagctatttctagaacacaagataaaat 626307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 10143094 - 10143154
Alignment:
Q  333 acttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||||| ||||||| ||| | ||||| ||||||||||||| ||||| ||||||||||||    
T  10143094 acttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaa 10143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 26857231 - 26857085
Alignment:
Q  360 gctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgtttttgtaagccat-ttggagagctt------ctaagctg 452  Q
    ||||||||||||||||||||| |||| ||||||| ||   ||| |||||| |||||||  ||||||||||| || |||||||| ||       |||||||    
T  26857231 gctatttctataacacaagataaaatgaagtcaaactgtttttacataatatataagccatttttgtaagctatcttggagagtttgtggaaataagctg 26857132  T
Q  453 gaaatagtttct-aaaatgtcatcagttgttttcataagttttccca 498  Q
     ||||||  ||| ||  |||||| |||||||||||||||||||||||    
T  26857131 aaaatagactctgaacctgtcataagttgttttcataagttttccca 26857085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 26857283 - 26857236
Alignment:
Q  285 gctattaggggattgtttggaacttattttgcagcttataaaataagc 332  Q
    ||||| ||||| ||||||||||||||||||||||||||| || |||||    
T  26857283 gctatcaggggcttgtttggaacttattttgcagcttattaattaagc 26857236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 43259773 - 43259816
Alignment:
Q  350 ttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||    
T  43259773 ttacggataagctatttctataacacaagataaaataaagtcaa 43259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 787275 - 787313
Alignment:
Q  355 aataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  787275 aataagctatttctataacacaagataaaataaagtcaa 787313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 5045295 - 5045242
Alignment:
Q  343 taagtgtttacgaataagctatttctataacacaagattaaattaagtcaagct 396  Q
    |||||||||| | ||||||||||| ||||||| ||||| |||| ||||||||||    
T  5045295 taagtgtttatgtataagctatttttataacaaaagataaaataaagtcaagct 5045242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 35755656 - 35755611
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataa 372  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||    
T  35755656 ataaacacttgtcgtataagtgtttatgtataagctatttctataa 35755611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 9478222 - 9478262
Alignment:
Q  334 cttatcgtataagtgtttacgaataagctatttctataaca 374  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  9478222 cttatcatataagtgtttatgtataagctatttctataaca 9478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 17952853 - 17952789
Alignment:
Q  329 aagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||||||||| |||||| | |||   ||||||||||||||||||| ||||| |||| |||||||    
T  17952853 aagcacttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaa 17952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 41407023 - 41407087
Alignment:
Q  359 agctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgtttt 423  Q
    |||||||||||||||||||||| |||| |||| || || | |||| ||| |||||||| ||||||    
T  41407023 agctatttctataacacaagataaaataaagttaaactgcttttgtatattctataagttgtttt 41407087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 43530283 - 43530199
Alignment:
Q  310 attttgcagcttataaaataagcactt-atcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||||||||||||  ||||||| || ||| ||||||   ||| ||||||||||||||||||  ||||||| |||| |||||||    
T  43530283 attttgcagcttatagcataagcattttatcatataagcacttatgaataagctatttctataggacaagataaaataaagtcaa 43530199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 419
Target Start/End: Complemental strand, 425998 - 425886
Alignment:
Q  305 aacttattttgcagcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgc 404  Q
    ||||||||||||||||||||  |||||| ||||| |||||| |  ||| ||| ||| || |||||||| ||||||| |||| ||||||| ||  |||||     
T  425998 aacttattttgcagcttatagcataagcgcttattgtataatttcttatgaacaagttaattctataatacaagataaaataaagtcaaact--gtttgt 425901  T
Q  405 ataatctataagctg 419  Q
     ||||||||||||||    
T  425900 gtaatctataagctg 425886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 2223071 - 2223117
Alignment:
Q  334 cttatcgtataagtgtttacgaataagctatttctataacacaagat 380  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||    
T  2223071 cttatcgtataagtgtttatgtataagctatttctataacaaaagat 2223117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 22388067 - 22388005
Alignment:
Q  318 gcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagat 380  Q
    |||||||| |||| |||||||| | |||||| ||| | ||||||||||||||||||| |||||    
T  22388067 gcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagat 22388005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 39169578 - 39169473
Alignment:
Q  318 gcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagc 417  Q
    |||||||  |||||| |||||| ||| || | |||||||||||||||||| || ||||||||  |||| ||||||  ||   |||| ||||||||||| |    
T  39169578 gcttatagcataagcgcttatcatatgagcgcttacgaataagctatttccattacacaagaaaaaatgaagtcagactgtttttgtataatctataaac 39169479  T
Q  418 tgtttt 423  Q
    ||||||    
T  39169478 tgtttt 39169473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 47941242 - 47941286
Alignment:
Q  333 acttatcgtataagtgtttacgaataagctatttctataacacaa 377  Q
    ||||||| |||||| | ||| ||||||||||||||||||||||||    
T  47941242 acttatcatataagcgcttaagaataagctatttctataacacaa 47941286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 42641808 - 42641729
Alignment:
Q  307 cttattttgcagcttataaaataagcacttatcgt-ataagtgtttacgaataagctatttctataacacaagattaaat 385  Q
    |||| |||||||||||| | ||||||||||||| | ||||||||||| | |||||||||||| |||||| ||||| ||||    
T  42641808 cttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaaagataaaat 42641729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 51044597 - 51044547
Alignment:
Q  343 taagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||||||| | ||||||||||||||||||| ||||| |||| |||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagtcaa 51044547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 47970235 - 47970300
Alignment:
Q  328 taagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||| |||| || |||||||| ||| | ||||||||||||||||||| ||||| |||| |||||||    
T  47970235 taaggacttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaa 47970300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 7205973 - 7205917
Alignment:
Q  318 gcttataaaataagcacttatcgtataagtgtttacgaataagctatttctataaca 374  Q
    |||||||  ||||||||||||| ||||| |||||| | ||||||||| |||||||||    
T  7205973 gcttatagtataagcacttatcatataactgtttatgcataagctatatctataaca 7205917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 4699749 - 4699700
Alignment:
Q  344 aagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||| ||| |||||||||||||||| ||||||||||||||| |||||||    
T  4699749 aagtgcttatgaataagctatttctacaacacaagattaaataaagtcaa 4699700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 45975861 - 45975912
Alignment:
Q  332 cacttatcgtataagtgtttacgaataagctatttctataacacaagattaa 383  Q
    |||||||| |||||||| ||||  ||||||||||||||||||| ||||||||    
T  45975861 cacttatcatataagtgcttacacataagctatttctataacaaaagattaa 45975912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 870962 - 871027
Alignment:
Q  328 taagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||| |||||| |||||||| ||| | |||| |||||| ||||||| ||||| ||||||||||||    
T  870962 taagcgcttatcatataagtgcttatgtataaactatttttataacaaaagataaaattaagtcaa 871027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 24702206 - 24702247
Alignment:
Q  356 ataagctatttctataacacaagattaaattaagtcaagctt 397  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  24702206 ataagctatttctataacaaaaaattaaataaagtcaagctt 24702247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 29046066 - 29046014
Alignment:
Q  328 taagcacttatcgtataagtgtttacgaataagctatttctataacacaagat 380  Q
    ||||||||||||||||||||| ||  | ||||| ||||||||||||| |||||    
T  29046066 taagcacttatcgtataagtgcttgtgtataagatatttctataacaaaagat 29046014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 18857538 - 18857458
Alignment:
Q  343 taagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctgtttt 423  Q
    |||||||||| |||||||||||||| |||||||| ||| |||| |||||||  |   |||  |||||||||||||||||||    
T  18857538 taagtgtttatgaataagctatttcaataacacacgataaaataaagtcaaattgtttttctataatctataagctgtttt 18857458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 912796 - 912737
Alignment:
Q  334 cttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||| |||||| ||||| ||||||| |||||||||||||||| || |||| |||||||    
T  912796 cttatcatataagcgtttatgaataagttatttctataacacaatataaaataaagtcaa 912737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 10391269 - 10391327
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaat 385  Q
    |||| |||||||| |||||||| ||||| ||||||||||| ||||||| ||||| ||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttataacaaaagataaaat 10391327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 28578837 - 28578877
Alignment:
Q  356 ataagctatttctataacacaagattaaattaagtcaagct 396  Q
    ||||||||||||||||||| ||||| |||| ||||||||||    
T  28578837 ataagctatttctataacataagataaaataaagtcaagct 28578877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 35135802 - 35135750
Alignment:
Q  341 tataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||||||||| | ||||| ||||||||||||| ||||| |||| |||||||    
T  35135802 tataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaa 35135750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 926430 - 926469
Alignment:
Q  354 gaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  926430 gaataagctatttctataacacaagataaaataaagtcaa 926469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 6791 - 6725
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||||||||||| |||||||| ||| | |||| |||||||||||||| || || || |||||||||    
T  6791 ataagcacttatcatataagtgcttatgtataaactatttctataacaaaaaataaacttaagtcaa 6725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 116710 - 116644
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    ||||||||||||| |||||||| ||| | |||| |||||||||||||| || || || |||||||||    
T  116710 ataagcacttatcatataagtgcttatgtataaactatttctataacaaaaaataaacttaagtcaa 116644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 34958271 - 34958313
Alignment:
Q  354 gaataagctatttctataacacaagattaaattaagtcaagct 396  Q
    |||||| |||||||||||||||||||| |||| ||||||||||    
T  34958271 gaataaactatttctataacacaagataaaataaagtcaagct 34958313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 38462197 - 38462263
Alignment:
Q  327 ataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||| |||||||| ||||||||||||   |||||||||||||||| || ||||| |||| |||||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaa 38462263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 51278318 - 51278245
Alignment:
Q  320 ttataaaataagcacttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||||| ||||||| ||||| ||||| || | | | ||||||||||||||||||| || ||||||| |||||||    
T  51278318 ttataatataagcatttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaa 51278245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 41155142 - 41155178
Alignment:
Q  357 taagctatttctataacacaagattaaattaagtcaa 393  Q
    |||| |||||||||||||||||||||||| |||||||    
T  41155142 taagttatttctataacacaagattaaataaagtcaa 41155178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 1219 - 1162
Alignment:
Q  336 tatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||| |||||||| ||| | ||||||||||||||||||| ||||| |||| |||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 1162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 2756 - 2813
Alignment:
Q  336 tatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaa 393  Q
    |||| |||||||| ||| | ||||||||||||||||||| ||||| |||| |||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 2813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 143208 - 143124
Alignment:
Q  334 cttatcgtataagtgtttacgaataagctatttctataacacaagattaaattaagtcaagcttcgtttgcataatctataagctg 419  Q
    |||||| |||||| | ||| |||| |||||||||||||||||||||| |||| | ||||| || | |||| |||| ||||||||||    
T  143208 cttatcatataagcgcttatgaattagctatttctataacacaagataaaataatgtcaaactgc-tttgtataacctataagctg 143124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University