View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_12 (Length: 609)

Name: NF19380_low_12
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_12
NF19380_low_12
[»] chr7 (9 HSPs)
chr7 (1-313)||(20343140-20343452)
chr7 (538-593)||(20343038-20343093)
chr7 (134-283)||(39832123-39832262)
chr7 (140-297)||(3689333-3689490)
chr7 (139-196)||(11511155-11511212)
chr7 (146-222)||(36670274-36670350)
chr7 (134-222)||(39831035-39831123)
chr7 (233-283)||(32021120-32021170)
chr7 (135-236)||(3689947-3690048)
[»] chr8 (12 HSPs)
chr8 (139-287)||(39137958-39138096)
chr8 (187-307)||(32319746-32319866)
chr8 (139-222)||(35352304-35352387)
chr8 (146-239)||(32319311-32319404)
chr8 (139-196)||(41826756-41826813)
chr8 (134-222)||(3207187-3207275)
chr8 (134-222)||(18195320-18195408)
chr8 (134-283)||(3206504-3206643)
chr8 (233-287)||(39137354-39137408)
chr8 (140-196)||(14396551-14396607)
chr8 (151-222)||(18607616-18607687)
chr8 (139-196)||(9012061-9012118)
[»] chr1 (23 HSPs)
chr1 (139-307)||(50277906-50278064)
chr1 (139-307)||(50289574-50289732)
chr1 (134-283)||(35575874-35576013)
chr1 (160-307)||(39773298-39773446)
chr1 (134-283)||(22373308-22373447)
chr1 (134-222)||(2483194-2483282)
chr1 (134-222)||(22374442-22374530)
chr1 (149-304)||(50191113-50191268)
chr1 (134-222)||(10845543-10845631)
chr1 (139-240)||(18608910-18609013)
chr1 (139-196)||(5496333-5496390)
chr1 (218-307)||(18122311-18122400)
chr1 (139-283)||(35574908-35575042)
chr1 (146-239)||(51309091-51309184)
chr1 (146-222)||(8850541-8850617)
chr1 (146-246)||(39772891-39772991)
chr1 (151-222)||(10844658-10844729)
chr1 (224-307)||(39870924-39871007)
chr1 (146-196)||(5495508-5495558)
chr1 (233-307)||(42023218-42023292)
chr1 (202-287)||(51308653-51308738)
chr1 (134-222)||(8851590-8851678)
chr1 (139-247)||(19173111-19173218)
[»] chr4 (15 HSPs)
chr4 (139-287)||(8113349-8113487)
chr4 (139-256)||(14014351-14014468)
chr4 (147-280)||(14014894-14015027)
chr4 (134-283)||(1949953-1950092)
chr4 (134-283)||(56162276-56162415)
chr4 (139-247)||(23941648-23941756)
chr4 (218-307)||(47370958-47371047)
chr4 (139-196)||(31690165-31690222)
chr4 (134-222)||(8683654-8683742)
chr4 (151-222)||(6945523-6945594)
chr4 (139-222)||(56164049-56164132)
chr4 (146-196)||(5044944-5044994)
chr4 (139-185)||(5045773-5045819)
chr4 (134-283)||(26044931-26045070)
chr4 (146-222)||(38941178-38941254)
[»] chr5 (11 HSPs)
chr5 (134-283)||(19080814-19080953)
chr5 (233-307)||(25109889-25109963)
chr5 (233-307)||(25168981-25169055)
chr5 (146-239)||(7209138-7209231)
chr5 (163-287)||(7209566-7209691)
chr5 (134-222)||(19080264-19080352)
chr5 (139-234)||(8469321-8469417)
chr5 (139-222)||(20339677-20339760)
chr5 (146-196)||(3389368-3389418)
chr5 (139-185)||(3390996-3391042)
chr5 (134-222)||(25838529-25838617)
[»] chr3 (15 HSPs)
chr3 (139-307)||(44908697-44908855)
chr3 (139-284)||(32982303-32982449)
chr3 (134-222)||(43492282-43492370)
chr3 (139-222)||(17195771-17195854)
chr3 (139-222)||(19191411-19191494)
chr3 (139-284)||(23310535-23310681)
chr3 (146-286)||(14404568-14404698)
chr3 (139-222)||(16913804-16913887)
chr3 (139-185)||(24199981-24200027)
chr3 (134-283)||(43493513-43493652)
chr3 (135-236)||(8320147-8320248)
chr3 (139-196)||(54515551-54515608)
chr3 (134-222)||(17339913-17340001)
chr3 (233-286)||(44909322-44909375)
chr3 (202-239)||(51924442-51924479)
[»] chr2 (19 HSPs)
chr2 (134-283)||(2283973-2284112)
chr2 (134-283)||(36912597-36912736)
chr2 (139-239)||(34239451-34239552)
chr2 (134-283)||(9261117-9261256)
chr2 (139-283)||(2284941-2285075)
chr2 (134-222)||(6583099-6583187)
chr2 (135-307)||(16155986-16156158)
chr2 (134-222)||(20651363-20651451)
chr2 (139-222)||(36911675-36911758)
chr2 (225-307)||(7697481-7697563)
chr2 (134-196)||(44531919-44531981)
chr2 (151-283)||(9260012-9260134)
chr2 (233-289)||(13105440-13105496)
chr2 (134-194)||(44531805-44531865)
chr2 (139-222)||(20634084-20634167)
chr2 (146-208)||(13105108-13105170)
chr2 (139-184)||(20633110-20633155)
chr2 (233-289)||(13105701-13105757)
chr2 (134-222)||(36150155-36150243)
[»] scaffold0169 (1 HSPs)
scaffold0169 (139-222)||(1408-1491)
[»] chr6 (10 HSPs)
chr6 (139-222)||(33707485-33707568)
chr6 (141-292)||(35074168-35074319)
chr6 (134-283)||(3646556-3646695)
chr6 (134-283)||(16008265-16008404)
chr6 (146-196)||(16009415-16009465)
chr6 (141-239)||(17551150-17551248)
chr6 (233-287)||(32531715-32531769)
chr6 (218-307)||(26666926-26667015)
chr6 (134-222)||(13701791-13701879)
chr6 (134-222)||(25133368-25133456)
[»] scaffold0119 (2 HSPs)
scaffold0119 (218-307)||(3778-3867)
scaffold0119 (218-307)||(15833-15922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (139-196)||(62697-62754)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 20343452 - 20343140
Alignment:
Q  1 gaacaataatctcacattagagaggatactttgttgttttgagaagcacactaggagtatttattaattaatcttagccaccgactaataattaagtcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  20343452 gaacaataatctcacattagagaggatactttgttgttttgagaagcacactaggaatatttattaattaatcttacccaccgactaataattaagtcat 20343353  T
Q  101 gggttgagatttggagcaagtctttcaacttacgcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20343352 gggttgagatttggagcaagtctttcaacttacgcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagagaagaaa 20343253  T
Q  201 gttaaagtttatcatatcaatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactatt 300  Q
     ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  20343252 attaaagcctaccatatcaatttttattaatcaatctaagtcattaatctgtattagaattcaagatcatgatttagagtaagttaacacacatactatt 20343153  T
Q  301 ggagtcatctcct 313  Q
     ||||||| ||||    
T  20343152 agagtcatatcct 20343140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 20343093 - 20343038
Alignment:
Q  538 tctatatataatatagactagaaccaaattatgagaagtagagtctaagtacatac 593  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20343093 tctatatatagtatagactagaaccaaattatgagaagtagagtctaagtacatac 20343038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 39832123 - 39832262
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||  |||||||||||||          |    
T  39832123 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatatcaatt----------a 39832212  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  39832213 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 39832262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 297
Target Start/End: Complemental strand, 3689490 - 3689333
Alignment:
Q  140 aaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    |||| ||||||||||||||   ||||||  ||||||||| || ||| ||| ||| |||||| ||||||| ||| |||||| || |||||| |||||| ||    
T  3689490 aaaactcattaattgttttaccattttgaagtgatgaatattaacttcaatagagaagaaaattaaagtctattatatcacttattattattcaatccaa 3689391  T
Q  240 gtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatact 297  Q
    | ||| |||  ||| ||||| | ||| | | |||||||||||||| | ||||| ||||    
T  3689390 gccatcaattgataatagaactaaaggttaagatttggagtaagtaaccaaacttact 3689333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 11511212 - 11511155
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  11511212 taaatgtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 11511155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 36670350 - 36670274
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||||||||||||||| ||||| | |||| ||| ||| |||||| ||| ||||||| || ||||||||||    
T  36670350 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagtctaccatatcaatt 36670274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 39831123 - 39831035
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||    
T  39831123 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt 39831035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 32021120 - 32021170
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  32021120 aatctaagtcattaaccaatattagaattaaaggtcaagatttggagtaag 32021170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 3689947 - 3690048
Alignment:
Q  135 caagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaa 234  Q
    ||||||||||| ||||||||||||   |||||| || ||||| |||| |||| || | | |||||| ||||||| || ||||||| || |||||| ||||    
T  3689947 caagtaaaagtaattaattgttttaccattttgaggggatgagtgttaactctaatatagaagaaaattaaagtctaccatatcacttattattattcaa 3690046  T
Q  235 tc 236  Q
    ||    
T  3690047 tc 3690048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 39137958 - 39138096
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||| | |||| ||| ||||||| || ||||||||||          ||| ||    
T  39137958 taaaagacattaattgttttattattttgtggtgatgagtgttgactccaatataaaataaaattaaagtctaccatatcaatt----------aattta 39138047  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaagttaa 287  Q
    ||||||||||| |||||  |||| ||| |||||||||||||||||||||    
T  39138048 agtcattaatcaatatttaaattaaaggtcatgatttggagtaagttaa 39138096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 32319746 - 32319866
Alignment:
Q  187 caacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagtta 286  Q
    ||||||| || ||| ||||||| ||||||||||||| |||| |||||||||||  |||||||  |||||||| || ||| |||  |||||||||||||||    
T  32319746 caacagagaacaaaattaaagtctatcatatcaattattatgaatcaatctaaaccattaattgatattagagttaaaggtcaaaatttggagtaagtta 32319845  T
Q  287 acaaacatactattggagtca 307  Q
    | | || |||| |||||||||    
T  32319846 atagacttactcttggagtca 32319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 35352304 - 35352387
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||||||||||||| |||||||| ||  |||||| ||| ||||||  || ||||||||||    
T  35352304 taaaagacatttattgttttgttattttgtggtgatgagtgttgactacagtagaaaataaaattaaagcctaccatatcaatt 35352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 32319404 - 32319311
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    |||||||| |||||  |||||| | |||||| |||| ||||||| |||||||||| ||||||||||   ||||| || ||||||||||||||||    
T  32319404 cattaattattttgccattttgagatgatgagtgttaactccaatagaaaagaaaattaaagtttactgtatcacttattattaatcaatctaa 32319311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 41826813 - 41826756
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  41826813 taaaagtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 41826756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 3207187 - 3207275
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||  || ||||||| |||||||||||||    
T  3207187 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagtctatcatatcaatt 3207275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 18195408 - 18195320
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| ||||||  ||| |||||||||||||||||||||||| | |||| ||| ||| ||||||  || ||||||| |||||||||||||    
T  18195408 gcaattaaaagatatttattgttttgttattttgtggtgataagtgttaactacaatagaaaatgaaattaaagtctatcatatcaatt 18195320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 3206643 - 3206504
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||| | | |||||||| ||| ||||||   | ||||||  |||||||||||||          |    
T  3206643 gcaattaaaagacatttattgttttgttattttgtggtggtaagtgttgactacaatagaaaatggaattaaagcctatcatatcaatt----------a 3206554  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  3206553 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 3206504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 39137408 - 39137354
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaa 287  Q
    |||||||| |||||||| ||||||||||| ||  |||||||||||||||||||||    
T  39137408 aatctaagccattaatcaatattagaattaaaagtcatgatttggagtaagttaa 39137354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 14396551 - 14396607
Alignment:
Q  140 aaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    ||||| |||| |||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  14396551 aaaagacatttattgttttgttattttgtggtgataaatgttaactacaatagaaaa 14396607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 18607616 - 18607687
Alignment:
Q  151 attgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||||| ||||||||||||||| | |||||||| ||| |||||| | | ||||||| || ||||||||||    
T  18607616 attgttttcttattttgtggtgataagtgttgactacaatagaaaatagaattaaagtctaccatatcaatt 18607687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 9012118 - 9012061
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||||| |||| ||||||||||||||||||| |||| ||| |||||| ||| ||||||    
T  9012118 taaaagacatttattgttttgttattttgtgatgataaatattgactacaatagaaaa 9012061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 50277906 - 50278064
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| ||||||||||||| |||||||| |||||||| |||||||||||| | | || ||| ||||||| || ||||||||||          ||||||    
T  50277906 taaaagacattaattgttttattattttggggtgatgagtgttgactccaatatataataaaattaaagtctaccatatcaatt----------aatcta 50277995  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||||||| |||||  |||| ||| ||||||||||||||||||||| | || |||| |||||||||    
T  50277996 agtcattaatcaatattgaaattaaaggtcatgatttggagtaagttaaaacacttactcttggagtca 50278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 50289574 - 50289732
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| ||||||||||||| |||||||| |||||||| |||||||||||| | | || ||| ||||||| || ||||||||||          ||||||    
T  50289574 taaaagacattaattgttttattattttggggtgatgagtgttgactccaatatataataaaattaaagtctaccatatcaatt----------aatcta 50289663  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||||||| |||||  |||| ||| ||||||||||||||||||||| | || |||| |||||||||    
T  50289664 agtcattaatcaatattgaaattaaaggtcatgatttggagtaagttaaaacacttactcttggagtca 50289732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 35575874 - 35576013
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||  || ||||||  |||||||||||||          |    
T  35575874 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatatcaatt----------a 35575963  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||||||| |||||||||||||    
T  35575964 atctaagccattaaccaatattagaattaaagatcaagatttggagtaag 35576013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 307
Target Start/End: Original strand, 39773298 - 39773446
Alignment:
Q  160 ttattttgtggtgatgaatgttga-ctccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcattaatctatattaga 258  Q
    ||||||| ||||||||| |||| | || ||| ||| || ||| |||||||  |||| ||||||| |||| ||||||||||| ||||||||  ||||||||    
T  39773298 ttattttatggtgatgagtgtttaactacaatagagaataaaattaaagtccatcacatcaattattatgaatcaatctaaatcattaattaatattaga 39773397  T
Q  259 attcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
     || ||| ||| ||||||||||||||||| | || |||| |||||||||    
T  39773398 gttaaaggtcaagatttggagtaagttaatagacttactcttggagtca 39773446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 22373447 - 22373308
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||| ||||| |||||| ||| ||| ||||||   | |||||| ||||||||||||||          |    
T  22373447 gcaattaaaagacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagcttatcatatcaatt----------a 22373358  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    |||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  22373357 atctaagtcattaaccaatattagaattaaaggtcaagatttggagtaag 22373308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 2483194 - 2483282
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| |||||||||||||    
T  2483194 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattgaattaaagtctatcatatcaatt 2483282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 22374442 - 22374530
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||| ||||||||||||||||||| | |||||||| ||| |||||| | | ||||||| |||||||||||||    
T  22374442 gcaattaaaagacatttattgctttgttattttgtggtgataagtgttgactacaatagaaaatataattaaagtctatcatatcaatt 22374530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 304
Target Start/End: Original strand, 50191113 - 50191268
Alignment:
Q  149 taattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcattaat 248  Q
    ||||||||||   |||||| |||||||| |||| ||||||| ||| ||||||||||||| ||||  ||||| |  || |||||||||||||| |||||||    
T  50191113 taattgttttaccattttggggtgatgagtgttaactccaatagagaagaaagttaaagcttattgtatcactaatttttaatcaatctaagccattaat 50191212  T
Q  249 ctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggag 304  Q
      | | || |||| ||  ||| ||| |||||||||| ||||||| |||| ||||||    
T  50191213 taacaatacaattaaaagtcaagatatggagtaagtaaacaaacttactcttggag 50191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 10845631 - 10845543
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||  |||||||||||||    
T  10845631 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatatcaatt 10845543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 18608910 - 18609013
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactcc--aacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatc 236  Q
    |||||||||||||||||||||| ||||||  ||||||||| || ||| |   | |||||| ||| ||||||| || ||||||| || |||||||||||||    
T  18608910 taaaagtcattaattgttttgtcattttgaagtgatgaattttaacttctatagagaaaaaaaaattaaagtctaccatatcacttattattaatcaatc 18609009  T
Q  237 taag 240  Q
    ||||    
T  18609010 taag 18609013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 5496333 - 5496390
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  5496333 taaatgtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 5496390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 18122311 - 18122400
Alignment:
Q  218 caatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||| |||||||||||||| |  |||||||  ||||||||||| |||  || ||| ||||||||  |||||||| ||||||||||||||    
T  18122311 caattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactattggagtca 18122400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 283
Target Start/End: Complemental strand, 35575042 - 35574908
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||          ||||||    
T  35575042 taaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt----------aatcta 35574953  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    || |||||| | ||||||||||| ||| ||| |||||||||||||    
T  35574952 agccattaaccaatattagaattaaaggtcaagatttggagtaag 35574908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 51309091 - 51309184
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    ||||||||||||||  ||||||   |||||| |||| ||||||| |||||| ||| |||||| ||||  ||||| || ||||||||||||||||    
T  51309091 cattaattgttttgccattttgaaatgatgagtgttaactccaatagaaaataaaattaaagcttattgtatcacttattattaatcaatctaa 51309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 8850617 - 8850541
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||||||||||||||| ||||| | |||||||| ||| ||||||   | ||||||| |||||||||||||    
T  8850617 catttattgttttgttattttgtagtgataagtgttgactacaatagaaaatcgaattaaagtctatcatatcaatt 8850541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 39772991 - 39772891
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcatt 245  Q
    |||||||||||||   ||||||   |||||| |||| ||| ||| |||||||||| |||||| ||||  ||||| || |||||||||||||||| |||||    
T  39772991 cattaattgtttttccattttgaaatgatgagtgttaacttcaatagaaaagaaaattaaagcttattgtatcacttattattaatcaatctaaatcatt 39772892  T
Q  246 a 246  Q
    |    
T  39772891 a 39772891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 10844729 - 10844658
Alignment:
Q  151 attgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||||| ||||||||||||||| | |||||||| ||| |||||| | | ||||||  |||||||||||||    
T  10844729 attgttttcttattttgtggtgataagtgttgactacaatagaaaatataattaaagcctatcatatcaatt 10844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 39871007 - 39870924
Alignment:
Q  224 ttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    |||||||||||||| |  |||||||  ||||||||||| |||  || ||| ||||||||  |||||||| ||||||||||||||    
T  39871007 ttattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactattggagtca 39870924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 5495558 - 5495508
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  5495558 catttattgttttgttattttgtggtgataaatgttaactacaatagaaaa 5495508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 42023292 - 42023218
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    |||||||| |||||||| |||||| |||| ||| ||| ||||||||||||||||  | || |||| |||||||||    
T  42023292 aatctaagccattaatcaatattacaattaaaggtcaagatttggagtaagttattacacttactcttggagtca 42023218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 51308738 - 51308653
Alignment:
Q  202 ttaaagtttatcatatcaatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaa 287  Q
    |||||||  |||||||||||| |||| |||||||||||  |||||||  |||||||| || ||  ||| ||||| |||||||||||    
T  51308738 ttaaagtccatcatatcaattattatgaatcaatctaaaccattaattgatattagagttaaaagtcaagatttagagtaagttaa 51308653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 8851590 - 8851678
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||| ||||||||| ||||| | |||| ||| ||| ||||||  || ||||||  |||||||||||||    
T  8851590 gcaattaaaagacatttattgtttttttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagcatatcatatcaatt 8851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 19173111 - 19173218
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    ||||| |||||||||||||||  |||||| | |||||| |||| |||| || ||| |||||| |||||| ||||  ||||| || || |||| |||||||    
T  19173111 taaaactcattaattgttttgccattttgggatgatgagtgttaactctaatagagaagaaaattaaagcttattgtatcacttatt-ttaaccaatcta 19173209  T
Q  239 agtcattaa 247  Q
    || ||||||    
T  19173210 agccattaa 19173218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 8113349 - 8113487
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| |||| |||||||| ||||||||||||||||| |||||||||||| | | || ||| ||||||| || ||||||||||          ||||||    
T  8113349 taaaagacattcattgttttattattttgtggtgatgagtgttgactccaatatagaataaaattaaagtctaccatatcaatt----------aatcta 8113438  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaagttaa 287  Q
    || |||||||| |||||  |||||||| |||||||||||||||||||||    
T  8113439 agccattaatcaatattgaaattcaaggtcatgatttggagtaagttaa 8113487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 14014468 - 14014351
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    ||||||||||||||| ||||||| ||| || ||||||| |||||||| ||| ||| ||| || |||||||||| | |||||||| |||||||||||||||    
T  14014468 taaaagtcattaattattttgttgtttagtagtgatgagtgttgacttcaatagagaaggaaattaaagtttaccgtatcaattattattaatcaatcta 14014369  T
Q  239 agtcattaatctatatta 256  Q
    |  |||||| | ||||||    
T  14014368 aaccattaagcaatatta 14014351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 14014894 - 14015027
Alignment:
Q  147 attaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcatta 246  Q
    ||||||| ||||||| |||||| ||||||   ||||||||||| ||| ||| ||  |||||  || |||||||||| |||||||||||||||| ||||||    
T  14014894 attaattattttgttgttttgtagtgatgcgggttgactccaatagagaaggaaactaaagactaccatatcaattattattaatcaatctaaatcatta 14014993  T
Q  247 atctatattagaattcaagatcatgatttggagt 280  Q
    ||| ||||||| ||| |||  |||||||||||||    
T  14014994 atcaatattaggattaaaggccatgatttggagt 14015027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 1950092 - 1949953
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| |||||||||||||          |    
T  1950092 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactgcaatagaaaatggaattaaagtctatcatatcaatt----------a 1950003  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  1950002 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 1949953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 56162415 - 56162276
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||  || ||||||  |||||||||||||          |    
T  56162415 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattaaattaaagcctatcatatcaatt----------a 56162326  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||||||| ||||| |||||||    
T  56162325 atctaagccattaaccaatattagaattaaagatcaagattttgagtaag 56162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 23941648 - 23941756
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||||||||||||||||||  |||||| | |||||| |||| |||| || ||| |||||| |||||||||||  ||||| || || |||| |||||||    
T  23941648 taaaagtcattaattgttttgccattttgggatgatgagtgttaactctaatagagaagaaaattaaagtttattgtatcacttatttttaaccaatcta 23941747  T
Q  239 agtcattaa 247  Q
    || ||||||    
T  23941748 agccattaa 23941756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 47370958 - 47371047
Alignment:
Q  218 caatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||| |||||||||||||| || |||||||  ||||||||||| ||| ||| ||| || ||||| ||||||||| |||| |||||||||    
T  47370958 caattattattaatcaatcttagccattaattgatattagaattaaaggtcaagatgtgaagtaacttaacaaacttactcttggagtca 47371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 31690165 - 31690222
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  31690165 taaatgtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 31690222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 8683742 - 8683654
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| | ||||   | ||||| | |||||||||||||    
T  8683742 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaataaaaaatggaattaaaatctatcatatcaatt 8683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 6945523 - 6945594
Alignment:
Q  151 attgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||||| ||||||||||||||| | |||||||| ||| |||||| | | ||||||| || ||||||||||    
T  6945523 attgttttcttattttgtggtgataagtgttgactacaatagaaaatagaattaaagtctaccatatcaatt 6945594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 56164049 - 56164132
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||    
T  56164049 taaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt 56164132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 5044994 - 5044944
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  5044994 catttattgttttgttattttgtggtgataaatgttaactacaatagaaaa 5044944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 5045773 - 5045819
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgact 185  Q
    |||| |||||| |||||||||||||||||||||||| | ||||||||    
T  5045773 taaatgtcatttattgttttgttattttgtggtgataagtgttgact 5045819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 26044931 - 26045070
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||| |||||||||||| |||||| | |||||||| ||| ||||||   | ||||||  |||||||||||||          |    
T  26044931 gcaattaaaagacatttattggtttgttattttgaggtgataagtgttgactacaatagaaaatggaattaaagcctatcatatcaatt----------a 26045020  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||||| ||||||||||| ||| ||| |||||| ||||||    
T  26045021 atctaagccattaatcaatattagaattaaaggtcaagatttgtagtaag 26045070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 38941254 - 38941178
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| ||||||||||| ||||| | |||||||| ||| |||||| ||| ||||||  || ||||||||||    
T  38941254 catttattgttatgttattttgtagtgataagtgttgactacaatagaaaataaaattaaagcctaccatatcaatt 38941178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 19080814 - 19080953
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| |||||||||||||          |    
T  19080814 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattgaattaaagtctatcatatcaatt----------a 19080903  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    |||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  19080904 atctaagtcattaaccaatattagaattaaaggtcaagatttggagtaag 19080953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 25109889 - 25109963
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||||| || |||| |||||||||    
T  25109889 aatctaagtcattaatcaatattgaaattaaaggtcatgatttggagtaagttaacacacttactcttggagtca 25109963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 25168981 - 25169055
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||||| || |||| |||||||||    
T  25168981 aatctaagtcattaatcaatattgaaattaaaggtcatgatttggagtaagttaacacacttactcttggagtca 25169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 7209231 - 7209138
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    ||||||||||||||  |||||| | |||||| |||| ||||||| |||||||||| |||||| ||||  ||||| || ||||||||||||||||    
T  7209231 cattaattgttttgccattttgagatgatgagtgttaactccaatagaaaagaaaattaaagcttattgtatcacttattattaatcaatctaa 7209138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 287
Target Start/End: Original strand, 7209566 - 7209691
Alignment:
Q  163 ttttgtggtgatgaatgttga-ctccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcattaatctatattagaatt 261  Q
    |||| |||||||||||||| | || ||| ||| || ||| ||||||| ||||||||||||| |||| |||||||||||  |||||||  |||||||| ||    
T  7209566 ttttatggtgatgaatgtttaactacaatagagaataaaattaaagtctatcatatcaattattatgaatcaatctaaaccattaattgatattagagtt 7209665  T
Q  262 caagatcatgatttggagtaagttaa 287  Q
     || || | |||||||||||||||||    
T  7209666 aaatattaagatttggagtaagttaa 7209691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 19080352 - 19080264
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| ||||||||||||||||||| |||| | |||||||| ||| ||||||  || ||||||| |||||||||||||    
T  19080352 gcaattaaaagacatttattgttttgttattttgtgatgataagtgttgactacaatagaaaatgaaattaaagtctatcatatcaatt 19080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 8469417 - 8469321
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatg-ttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaa 234  Q
    ||||||| ||||||||||||||||||||||| |||||| || || |||   | |||||||||| ||||||| || |||||||||| ||| |||||||    
T  8469417 taaaagttattaattgttttgttattttgtgatgatgagtgtttaactagcatagaaaagaaaattaaagtctaccatatcaattattaataatcaa 8469321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 20339677 - 20339760
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||| ||||||| | |||||||| ||| ||||||  || ||||||  || ||||||||||    
T  20339677 taaaagacatttattgttttgttattttctggtgataagtgttgactacaatagaaaatgaaattaaagcctaccatatcaatt 20339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 3389418 - 3389368
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  3389418 catttattgttttgttattttgtggtgataaatgttaactacaatagaaaa 3389368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 3390996 - 3391042
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgact 185  Q
    |||| |||||| |||||||||||||||||||||||| | ||||||||    
T  3390996 taaatgtcatttattgttttgttattttgtggtgataagtgttgact 3391042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 25838617 - 25838529
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||  |||||||||||||    
T  25838617 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaattgaattaaagcctatcatatcaatt 25838529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 44908855 - 44908697
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| ||||||||| ||||||||||||| || ||||||||||| ||||| ||| ||  || ||||| | |||| ||||||||          ||||||    
T  44908855 taaaagacattaattgctttgttattttgtagtcatgaatgttgattccaatagagaatgaaattaaaatctatcctatcaatt----------aatcta 44908766  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||||||| |||||  |||| ||| ||||||||||||||||||||||| || |||| || ||||||    
T  44908765 agtcattaatcaatattgaaattaaaggtcatgatttggagtaagttaacacacttactctttgagtca 44908697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 32982449 - 32982303
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatg-ttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatct 237  Q
    ||||||| ||||||||||||||||||||||| |||||| || || |||   | |||||||||| ||||||| | ||||||||||| ||| |||||||  |    
T  32982449 taaaagttattaattgttttgttattttgtgatgatgagtgtttaactagcatagaaaagaaaattaaagtctgtcatatcaattattaataatcaactt 32982350  T
Q  238 aagtcattaatctatattagaattcaagatcatgatttggagtaagt 284  Q
    || ||||| ||  ||||||||||| | |  || ||||||||||||||    
T  32982349 aaatcattgattgatattagaattaatggccaagatttggagtaagt 32982303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 43492370 - 43492282
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| |||||||||||||    
T  43492370 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctatcatatcaatt 43492282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 17195771 - 17195854
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||||||||||| |||||||||| ||| ||||||   | ||||||  |||||||||||||    
T  17195771 taaaagacatttattgttttgttattttgtggtgataaatgttgactacaatagaaaatggaattaaagcctatcatatcaatt 17195854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 19191494 - 19191411
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| || ||||||||||    
T  19191494 taaaagtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctaccatatcaatt 19191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 23310681 - 23310535
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgac-tccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatct 237  Q
    ||||||| |||||||||||||| |||||||| |||||| |||| |  | | | | |||||||| ||||||| || |||||||||| ||| ||||||| ||    
T  23310681 taaaagttattaattgttttgtcattttgtgatgatgagtgtttaagtaccataaaaaagaaaattaaagtctaccatatcaattattaataatcaacct 23310582  T
Q  238 aagtcattaatctatattagaattcaagatcatgatttggagtaagt 284  Q
    || ||||| ||  ||||||||||| | |  || ||||||||||||||    
T  23310581 aaatcattgattaatattagaattaatggccaagatttggagtaagt 23310535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 14404568 - 14404698
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcatt 245  Q
    |||| |||||||||||||||||||||||| | |||||||| ||| | ||||  || |||||| |||| |||||||||          ||| |||||||||    
T  14404568 catttattgttttgttattttgtggtgataagtgttgactacaatataaaatgaaattaaagcttattatatcaatt----------aatttaagtcatt 14404657  T
Q  246 aatctatattagaattcaagatcatgatttggagtaagtta 286  Q
    |||| | ||||||||| ||| ||| ||||||||||||||||    
T  14404658 aatcaaaattagaattaaaggtcaagatttggagtaagtta 14404698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 16913804 - 16913887
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||  || |||||| | | ||||||  || ||||||||||    
T  16913804 taaaagacattaattgttttgttattttgtggtgataagtgttgactataatagaaaatagaattaaagcctaccatatcaatt 16913887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 24199981 - 24200027
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgact 185  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||    
T  24199981 taaaagacattaattgttttgttattttgtggtgataagtgttgact 24200027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 43493513 - 43493652
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||          |    
T  43493513 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt----------a 43493602  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  43493603 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 43493652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 8320248 - 8320147
Alignment:
Q  135 caagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaa 234  Q
    ||||||||||| ||||||||||||  ||||||| || ||||| |||| |||| || | | |||||| ||||||| || ||||||| || |||||| ||||    
T  8320248 caagtaaaagtaattaattgttttactattttgaggggatgagtgttaactctaatacataagaaaattaaagtctaccatatcacttattattattcaa 8320149  T
Q  235 tc 236  Q
    ||    
T  8320148 tc 8320147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 54515551 - 54515608
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  54515551 taaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 54515608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 17340001 - 17339913
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||    
T  17340001 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt 17339913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 44909322 - 44909375
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagtta 286  Q
    ||||||| ||||||||| |||||| |||| ||| |||| |||||||||||||||    
T  44909322 aatctaaatcattaatcaatattaaaattgaaggtcataatttggagtaagtta 44909375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 51924479 - 51924442
Alignment:
Q  202 ttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  51924479 ttaaagtctatcatatcaattattattaatcaatctaa 51924442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 2284112 - 2283973
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||  || ||||||  |||||||||||||          |    
T  2284112 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatatcaatt----------a 2284023  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  2284022 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 2283973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 36912597 - 36912736
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||  || ||||||  |||||||||||||          |    
T  36912597 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatatcaatt----------a 36912686  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  36912687 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 36912736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 34239451 - 34239552
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatg-ttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatct 237  Q
    ||||||| ||||||||||||||||||||||| |||||| || || ||| | | |||||||||| ||||||| || |||||||||| ||| ||||||| ||    
T  34239451 taaaagttattaattgttttgttattttgtgatgatgagtgtttaactaccatagaaaagaaaattaaagtctaccatatcaattattaataatcaacct 34239550  T
Q  238 aa 239  Q
    ||    
T  34239551 aa 34239552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 9261117 - 9261256
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||||||||| | ||||||||  || | ||||   | ||||||| |||||||||||||          |    
T  9261117 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactataatataaaatggaattaaagtctatcatatcaatt----------a 9261206  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    |||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  9261207 atctaagtcattaaccaatattagaattaaaggtcaagatttggagtaag 9261256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 2284941 - 2285075
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatcta 238  Q
    |||||| |||| |||||||||||||||||| ||||| |||||| ||| ||| ||||||   | ||||||| |||||||||||||          ||||||    
T  2284941 taaaagacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatatcaatt----------aatcta 2285030  T
Q  239 agtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    || |||||| | ||||||||||| ||| ||| |||||||||||||    
T  2285031 agccattaaccaatattagaattaaaggtcaagatttggagtaag 2285075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 6583099 - 6583187
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| ||| |||||||||||||||||||| | |||||||| ||| ||||||   | |||||| ||||||||||||||    
T  6583099 gcaattaaaagacatttattattttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcttatcatatcaatt 6583187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 307
Target Start/End: Complemental strand, 16156158 - 16155986
Alignment:
Q  135 caagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaa 234  Q
    ||||||||||| ||||||||||||   |||||| || ||||| |||| |||| || | | |||||| ||||||| || ||||||| || |||||| ||||    
T  16156158 caagtaaaagtaattaattgttttaccattttgaggggatgagtgttaactctaatatagaagaaaattaaagtctaccatatcacttattattattcaa 16156059  T
Q  235 tctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    || ||| ||| |||  ||| || |||  |||   | |||||||||||||| | ||||| ||||||||||||||    
T  16156058 tccaagccatcaattgataataaaatcaaaggctaagatttggagtaagtaaccaaacttactattggagtca 16155986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 20651363 - 20651451
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||  |||||||||||||    
T  20651363 gcaattaaaagacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatatcaatt 20651451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 36911758 - 36911675
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||||| ||||| |||||| ||| ||| ||||||   | ||||||| |||||||||||||    
T  36911758 taaaagacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatatcaatt 36911675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 7697563 - 7697481
Alignment:
Q  225 tattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||||| ||||||||||||||||  ||||| ||||| || |||| |||||||||||||||| || || |||| || ||||||    
T  7697563 tattaattaatctaagtcattaattaatattggaattaaaaatcaagatttggagtaagttatcatacttactcttagagtca 7697481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 44531919 - 44531981
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||| |||| ||| |||||||||||||||||||| |||||||||| ||| ||||||    
T  44531919 gcaattaaaagacatttattattttgttattttgtggtgataaatgttgactacaatagaaaa 44531981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 9260134 - 9260012
Alignment:
Q  151 attgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaagtcattaatct 250  Q
    |||||||||||||||||| ||||| |||||| ||| ||| ||||||   | ||||||| |||||||||||||          |||||||| |||||| |     
T  9260134 attgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatatcaatt----------aatctaagccattaacca 9260045  T
Q  251 atattagaattcaagatcatgatttggagtaag 283  Q
    ||||||||||| ||| ||| |||||||||||||    
T  9260044 atattagaattaaaggtcaagatttggagtaag 9260012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 13105440 - 13105496
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaaca 289  Q
    ||||||||||||||||| |||||  |||| ||| |||||||||||||||| ||||||    
T  13105440 aatctaagtcattaatcaatattgaaattaaaggtcatgatttggagtaaattaaca 13105496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 44531805 - 44531865
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaa 194  Q
    |||| |||||| |||| ||| |||||||||||||||||||| |||||||||| ||| ||||    
T  44531805 gcaattaaaagacatttattattttgttattttgtggtgataaatgttgactacaatagaa 44531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 20634084 - 20634167
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| |||| |||||||||||||||||||||||| | |||||||| ||  ||||||  || ||||||  || ||||||||||    
T  20634084 taaaagacatttattgttttgttattttgtggtgataagtgttgactacagtagaaaatgaaattaaagcctaccatatcaatt 20634167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 13105108 - 13105170
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagt 208  Q
    |||| |||||||||||||||||||||||| | |||||||| ||| ||| ||| || |||||||    
T  13105108 catttattgttttgttattttgtggtgataattgttgactacaatagagaaggaaattaaagt 13105170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 20633155 - 20633110
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgac 184  Q
    |||||| |||| |||||||||||||||||||||||| | |||||||    
T  20633155 taaaagacatttattgttttgttattttgtggtgataagtgttgac 20633110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 13105701 - 13105757
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaaca 289  Q
    ||||||||||||||||| |||||  |||| ||  ||||||||||||||||| |||||    
T  13105701 aatctaagtcattaatcaatattgaaattaaatgtcatgatttggagtaaggtaaca 13105757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 36150155 - 36150243
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| || | |||||||||||||||||| ||||| | | |||||| ||| |||||| | | ||||||  |||||||||||||    
T  36150155 gcaattaaaagacacttattgttttgttattttgtagtgataattattgactacaatagaaaatagaattaaagcctatcatatcaatt 36150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 1408 - 1491
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||   | ||||||| || ||||||||||    
T  1408 taaaagtcatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctaccatatcaatt 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 33707485 - 33707568
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||| | | || ||| ||||||| || ||||| ||||    
T  33707485 taaaagacattaattgttttattattttgtggtgatgagtgttgactccaatatagaataaaattaaagtctaccatattaatt 33707568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 35074168 - 35074319
Alignment:
Q  141 aaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaag 240  Q
    |||||||||||||||||||  |||||| ||| ||||  ||| ||||||| ||| |||||| ||| ||| || |||| || || ||||||||||||||||     
T  35074168 aaagtcattaattgttttgccattttggggtaatgagagttaactccaatagagaagaaaattatagtctaccataccatttattattaatcaatctaaa 35074267  T
Q  241 tcattaatctatattagaattcaagatcatgatttggagtaagttaacaaac 292  Q
     | |||||  | | || |||| || |||| |||||||||||||| |||||||    
T  35074268 cctttaattgacaatacaattaaaaatcaagatttggagtaagtaaacaaac 35074319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 3646556 - 3646695
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| ||||||||||||||||||||| || | |||||||| ||  | ||||  || ||||||  |||||||||||||          |    
T  3646556 gcaattaaaagacatttattgttttgttattttgtggtaataagtgttgactacagtaaaaaatgaaattaaagcctatcatatcaatt----------a 3646645  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    |||||||||||||| | ||||||||||| ||| ||| |||||||||||||    
T  3646646 atctaagtcattaaccaatattagaattaaaggtcaagatttggagtaag 3646695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 16008404 - 16008265
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatca 233  Q
    |||| |||||| |||| |||||||||||||||||| ||||| | |||| ||| ||| ||||||   | ||||||| |||||||||||||          |    
T  16008404 gcaattaaaagacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatatcaatt----------a 16008315  T
Q  234 atctaagtcattaatctatattagaattcaagatcatgatttggagtaag 283  Q
    ||||||| |||||| | ||||||||||| ||| ||| |||||||||||||    
T  16008314 atctaagccattaaccaatattagaattaaaggtcaagatttggagtaag 16008265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 16009415 - 16009465
Alignment:
Q  146 cattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||| |||||||||||||||||||||||| | |||||||| ||| ||||||    
T  16009415 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaa 16009465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 17551248 - 17551150
Alignment:
Q  141 aaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatttttattaatcaatctaa 239  Q
    |||||||||||||||||||  |||||| |||  |||  ||| ||||||| ||| |||||| ||| ||| || |||| || || ||||||||||||||||    
T  17551248 aaagtcattaattgttttgccattttggggtactgagagttaactccaatagagaagaaaattatagtctaccataccatttattattaatcaatctaa 17551150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 32531715 - 32531769
Alignment:
Q  233 aatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaa 287  Q
    |||||||  ||||||||||||||| |||| | |||||||||||| ||||||||||    
T  32531715 aatctaaaccattaatctatattaaaattaatgatcatgatttgaagtaagttaa 32531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 26667015 - 26666926
Alignment:
Q  218 caatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||| |||||||||||||| |  |||||||  ||||||||||| |||  || ||| ||||||||  |||||||| |||| |||||||||    
T  26667015 caattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtca 26666926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 13701879 - 13701791
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||| ||||||||| ||||| | |||| ||| ||| ||||||  || ||||||  |||||||||||||    
T  13701879 gcaattaaaagacatttattgtttttttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagcatatcatatcaatt 13701791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 25133456 - 25133368
Alignment:
Q  134 gcaagtaaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaagaaagttaaagtttatcatatcaatt 222  Q
    |||| |||||| |||| |||||||| ||||||||| ||||| | |||| ||| ||| ||||||  || ||||||  |||||||||||||    
T  25133456 gcaattaaaagacatttattgtttttttattttgtagtgataagtgttaactacaaaagaaaatgaaattaaagcatatcatatcaatt 25133368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 3778 - 3867
Alignment:
Q  218 caatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||| |||||||||||||| |  |||||||  ||||||||||| |||  || ||| ||||||||  |||||||| |||| |||||||||    
T  3778 caattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtca 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 15833 - 15922
Alignment:
Q  218 caatttttattaatcaatctaagtcattaatctatattagaattcaagatcatgatttggagtaagttaacaaacatactattggagtca 307  Q
    ||||| |||||||||||||| |  |||||||  ||||||||||| |||  || ||| ||||||||  |||||||| |||| |||||||||    
T  15833 caattattattaatcaatcttaaccattaattgatattagaattaaaggccaagatgtggagtaacataacaaacttactcttggagtca 15922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 62754 - 62697
Alignment:
Q  139 taaaagtcattaattgttttgttattttgtggtgatgaatgttgactccaacagaaaa 196  Q
    |||||| |||| |||| ||||||||||||||||||| | |||||||| ||| ||||||    
T  62754 taaaagacatttattgctttgttattttgtggtgataagtgttgactacaatagaaaa 62697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University