View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_13 (Length: 605)
Name: NF19380_low_13
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 57 - 598
Target Start/End: Complemental strand, 9389470 - 9388928
Alignment:
| Q |
57 |
aatttgaaatccgaaatctacatatattatgtactgttcttaccatctaataagctgacgaagatttctacttaatatatagtcatatgtatttcatttt |
156 |
Q |
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| T |
9389470 |
aatttgaaatccgaatcctgcatatattatgtactgtccctatcaactattaaactgacgaagacttctatttaatatatagtcatatgtatttcatatt |
9389371 |
T |
|
| Q |
157 |
tgattaaaattaaacaccaaattagtgtgaatagtggattttactaaaacaagagaagagatatggtattttactaaaattagtaagagtctctctttaa |
256 |
Q |
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| T |
9389370 |
tgattaaaattaaacaccaaattagtgaaaatagtggattttactaaaacaagagaagagatatggtattttactaaaattagtaagagtctctctttaa |
9389271 |
T |
|
| Q |
257 |
---nnnnnnnnnnnnngagattcatataaatgcacccgtttactaaccgacctctcttggctatcatcaccaagtacatgtcatggggttgaattttaat |
353 |
Q |
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| T |
9389270 |
ttttttgttttgttttgagattcatataaatgcacccgtttactaaccgacctctcctggctatcatcaccaagtacatgtcatggggttggattttaat |
9389171 |
T |
|
| Q |
354 |
agtgagaaaagaaattcaatgcatactgctcccatannnnnnncagcattaaannnnnnnctcacttttaatttatactagtttgtaagagttgaagacg |
453 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||| |
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| T |
9389170 |
agtgagaaaagaaattcaatgcatactgctcccatatttttttcagcattaaatttttttctcacttttattttatacta-tttgtaagagttgaagacg |
9389072 |
T |
|
| Q |
454 |
tctacctacttaataaaaattcatcccatatttactactcaattgtaattaagcctatgcaaccatccaaaaaatttcgtgtggttaaaaccatctaatt |
553 |
Q |
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| T |
9389071 |
tctgcctaattaataaaaattcatcccatatttactactcaattgttattaagcctatgcaaccatccaaatttttttgtgtggttaaaaccatctaatt |
9388972 |
T |
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| Q |
554 |
ttgtattaaaaagtcttgatttaaatgtaatagcaggagtattat |
598 |
Q |
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| T |
9388971 |
ttgtatt-aaaagtcttgatttaaatgtaatagcaagagtattat |
9388928 |
T |
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