View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_15 (Length: 560)
Name: NF19380_low_15
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 30934956 - 30935487
Alignment:
| Q |
18 |
ctaccaagctacaacaattggttaaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30934956 |
ctaccaagctacaacaattggttaaagatttcaaacatacacatgattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaa |
30935055 |
T |
|
| Q |
118 |
ggggatttgaaacccacgtacactgtcatgtcattgttcaacatcgcacatcaccataaataacgtttgaagttaacggatagatgaaaccaaataacgc |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935056 |
cgggatttgaaacccacgtacactgtcatgtcatcgtttaacatcgcacatcaccataaataacgtttgaagttaacggatagatgaaaccaaataacgc |
30935155 |
T |
|
| Q |
218 |
aaaataaacccaaagtctattgtgatcttacgaaaaattcaaagactaaattgaacgatatttacaaattcagagactatatcgtctattcattcannnn |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
30935156 |
aaaataaacccaaagtctactgtgatcttacgaaaaattcaaagactaaattgaacgatatttacaaattcagagactatcttgtctattcattca-ttt |
30935254 |
T |
|
| Q |
318 |
nnnnncaggtaaaagaccgcttaccataatatatagtggcagagcctttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
30935255 |
tttttcaggtaaaagaccgcttaccataatatatagtggcagagcctttcttttcaagaatgtgagcttcatcaaaataatttgtggctttcctaagtag |
30935354 |
T |
|
| Q |
418 |
ctcataggggaagatttgccacttcaatttattctgctttggaaatatatcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgcc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935355 |
ctcataggggaagatttgccacttcaatttattctgctttggaaatatgtcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgcc |
30935454 |
T |
|
| Q |
518 |
gcaacttcatagggtcattgcaagtcctctgtg |
550 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
30935455 |
gcaacttcatagggtcattgcaagtcctctgtg |
30935487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 262 - 535
Target Start/End: Original strand, 30994106 - 30994381
Alignment:
| Q |
262 |
actaaattgaacgatatttacaaattcagagactatatcgtctattcattcannnnnnnnn--caggtaaaagaccgcttaccataatatatagtggcag |
359 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||| || |||||||| ||| ||||||||| || |||||||||||||| ||||| | |
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| T |
30994106 |
actaaattgaacgatagttacaaactcagagactaaattttctattcactcaaagttttttatcaggtaaaacacttcttaccataatatacagtgggcg |
30994205 |
T |
|
| Q |
360 |
agcctttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccacttcaatttattctgctttgg |
459 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
30994206 |
agcctttcttatcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcatatgggaagatttgccaattcaatttactctgctttgg |
30994305 |
T |
|
| Q |
460 |
aaatatatcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgccgcaacttcatagggtcat |
535 |
Q |
| |
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|||| | ||||| ||||||||||||||||| |||||||||| |||||||| |||| || |||| || ||||||||| |
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| T |
30994306 |
aaatgtttcagatgtgctagtgaagcagcaacacatacagatatcccacctcatttccccaacctcgtagggtcat |
30994381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 30993896 - 30994080
Alignment:
| Q |
22 |
caagctacaacaattggttaaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaagggg |
121 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||| || |||||||| || || ||| ||||||||||| | |||| | |
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| T |
30993896 |
caagctacaacaattggctaatgatttcaaacatacacatgattccaatcaaatacctcaacattttctatcaatactctaaagattcaatataaaggtg |
30993995 |
T |
|
| Q |
122 |
atttgaaacccacgtacactgtcatgtcattgttcaacatcgcacatcaccataaataacgtttgaagttaacggatagatgaaac |
207 |
Q |
| |
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|||| |||||||||| |||| ||| | ||| || ||||| ||| ||| |||| ||||||||||||||||||||| ||||||||| |
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| T |
30993996 |
atttaaaacccacgtcgactgccatatgattatt-aacatttcacgtcatcatagataacgtttgaagttaacggagagatgaaac |
30994080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 30965349 - 30965507
Alignment:
| Q |
250 |
aaaaattcaaagactaaattgaacgatatttacaaattcagagactatatcgtctattcattcannnnnnnnncaggtaaaagaccgcttaccataatat |
349 |
Q |
| |
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||||||||| | |||||||||| | ||| |||||||||||||||||| || |||||||| ||| || ||||||||| ||||||||||||| |
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| T |
30965349 |
aaaaattcagaaactaaattgaccaatagttacaaattcagagactaaattttctattcactcaaatttttttcatgtaaaagacttcttaccataatat |
30965448 |
T |
|
| Q |
350 |
atagtggcagagcctttcttttcaagaatgtgagcttcatcaaaataatttgtggcttt |
408 |
Q |
| |
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| |||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
30965449 |
acagtggccgagcctctcttttcaagaatgtgagcttgatcaaaataatatgtggcttt |
30965507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 453 - 548
Target Start/End: Original strand, 30965503 - 30965598
Alignment:
| Q |
453 |
gctttggaaatatatcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgccgcaacttcatagggtcattgcaagtcctctg |
548 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||| ||||||| |||| |||| || |||| |||||||||||||||| |||||||| |
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| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagatctcacctcatttccccaacctcatagggtcattgcacgtcctctg |
30965598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 25048611 - 25048687
Alignment:
| Q |
40 |
taaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtga |
116 |
Q |
| |
|
|||| |||||||||||||| || ||| |||| ||||||||| |||||||||||| ||||| | || ||||||||||| |
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| T |
25048611 |
taaaaatttcaaacatacacataatttcaatgaaatacttcaacattttcaattaattctaagaaaattcaatgtga |
25048687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 41147658 - 41147737
Alignment:
| Q |
18 |
ctaccaagctacaacaattggttaaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcatt |
97 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| |||||||||||||||| |
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|
| T |
41147658 |
ctaccaagctacaacaattggtaaaagatttcaaacatacacataattccaatcaaacacttcaacattttcaattcatt |
41147737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 33485887 - 33485851
Alignment:
| Q |
40 |
taaagatttcaaacatacaaatcattccaatcaaata |
76 |
Q |
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||||||||||||||||||| || |||||||||||||| |
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|
| T |
33485887 |
taaagatttcaaacatacacataattccaatcaaata |
33485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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