View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_17 (Length: 547)
Name: NF19380_low_17
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 55896647 - 55896130
Alignment:
| Q |
18 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttggccaaaagcaaaagcaaccgattgaagaatctacacaaagcaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896647 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttggccaaaagcaaaagcaaccgattgaagaatctacacaaagcaaagg |
55896548 |
T |
|
| Q |
118 |
gaaggaggagacaattttagcaccatcatgttgaggcttacgttggccttgtgtgttttgagtagcataattttgacatcctcagctcaaactcaatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896547 |
gaaggaggagacaattttagcaccatcatgttgaggcttacgttggccttgtgtgttttgagtagcataattttgacatcctcagctcaaactcaatctt |
55896448 |
T |
|
| Q |
218 |
gtaaaaaccaaacattctcagacaacagagcgttcacaacatgtcgtgatcttccacagttaacctcgtacctccactggtcatacgatgaaacaagtgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896447 |
gtaaaaaccaaacattctcagacaacagagcgttcacaacatgtcgtgatcttccacagttaacctcgtacctccactggtcatacgatgaaacaagtgg |
55896348 |
T |
|
| Q |
318 |
caaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaagcagcaatcttgaccctgccatgatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
55896347 |
caaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaagcagaaatcttgacccagccatgatc |
55896248 |
T |
|
| Q |
418 |
ggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattatagacacaagcacacggttgcaagaaggaacca |
517 |
Q |
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| T |
55896247 |
ggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattatagacacaagcacacggttgcaagaaggaacca |
55896148 |
T |
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| Q |
518 |
ttagttatcctgtttctg |
535 |
Q |
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| T |
55896147 |
ttagttatcctgtttctg |
55896130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 252 - 535
Target Start/End: Original strand, 1028550 - 1028833
Alignment:
| Q |
252 |
cacaacatgtcgtgatcttccacagttaacctcgtacctccactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaata |
351 |
Q |
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| T |
1028550 |
cacaacatgtcgtgatcttccacagttaacctcgtacctccactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaata |
1028649 |
T |
|
| Q |
352 |
actgcaacaaataggtgggttgcttgggccatcaatccaagcagcaatcttgaccctgccatgatcggagcacaagctttggtggctattccacaagcca |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028650 |
actgcaacaaataggtgggttgcttgggccatcaatccaagcagcaatcttgacccggccatgatcggagcacaagctttggtggctattccacaagcca |
1028749 |
T |
|
| Q |
452 |
gtggaagcccaaaagcctatacttcaaacattatagacacaagcacacggttgcaagaaggaaccattagttatcctgtttctg |
535 |
Q |
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| T |
1028750 |
gtggaagcccaaaagcctatacttcaaacattgtagacacaagcacacggttgcaagaaggaaccattagttatcctgtttctg |
1028833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1028447 - 1028500
Alignment:
| Q |
18 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttg |
71 |
Q |
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| T |
1028447 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttg |
1028500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 1028525 - 1028554
Alignment:
| Q |
80 |
caaaagcaaccgattgaagaatctacacaa |
109 |
Q |
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| T |
1028525 |
caaaagcaaccgattgaagaatctacacaa |
1028554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 9413940 - 9413856
Alignment:
| Q |
250 |
ttcacaacatgtcgtgatcttccacagttaacctcgtacctccactggtcatacgatgaaacaagtggcaaattagacatagcat |
334 |
Q |
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|||||| ||||||||||||| ||||| | |||||||| ||||||||| ||||||| |||||| || ||| | |||||||||| |
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| T |
9413940 |
ttcacatcatgtcgtgatctaccacaactcacctcgtatctccactggacatacgaccaaacaacaggaaaactcgacatagcat |
9413856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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