View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_18 (Length: 544)
Name: NF19380_low_18
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 180 - 451
Target Start/End: Complemental strand, 28286869 - 28286604
Alignment:
| Q |
180 |
agaatgttcgttaagactcaagagtaattacaattacagacaaaacagaacaaaaccataataattagaagcatttgannnnnnnncctaaaacttgttg |
279 |
Q |
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| T |
28286869 |
agaatgttagttaagactcaagagtaattaca------gacaaaacagaacaaaaccataataattagaagcatttgattttttttcctaaaacttgttg |
28286776 |
T |
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| Q |
280 |
ttccctattttattacacttgtgtaaaatggtttttccgcttcattacgaaatttctatatcagcatacggcaaaaataatttatcctacacacgtcttc |
379 |
Q |
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| T |
28286775 |
ttccctattttattatacttgtgtaaaatggtttttccgcttcattacgaaatttctatatcagcatacggcaaaaataatttatcccacacacgtcttc |
28286676 |
T |
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| Q |
380 |
accaaaaacaagcaataattaagacatatcgagaaaaattggttgcgttttggccacaaccatagccacaat |
451 |
Q |
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| T |
28286675 |
accaaaaacaagcaataattaagacatatcgagaaaaattggttgcgttttggccacaaccatagccacaat |
28286604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 483 - 529
Target Start/End: Complemental strand, 28286044 - 28285998
Alignment:
| Q |
483 |
tttttacgcaaccatagccacaatttcgcaagcaaatatcctccgtc |
529 |
Q |
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| T |
28286044 |
ttttgacgcgaccatagccacaatttcgcaagcaaatatcctccgtc |
28285998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 28286619 - 28286575
Alignment:
| Q |
463 |
caaccatagccacattttgttttttacgcaaccatagccacaattt |
508 |
Q |
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| T |
28286619 |
caaccatagccacaattt-ttttttacgcaaccatagtcacaattt |
28286575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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