View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_21 (Length: 493)
Name: NF19380_low_21
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 37336025 - 37335552
Alignment:
| Q |
20 |
tcatggccaaccacctcttcccgtagcagcacctatacaagatgtatctcatcatccccaacctcattttccattgccacaccatcatgaagatcatgtt |
119 |
Q |
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| T |
37336025 |
tcatggccaaccacctcttcccgtagcagcacctatacaagatgtatctcatcatccccaacctcattttccattgccacaccatcatgaagatcatgtt |
37335926 |
T |
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| Q |
120 |
ccattgcgtgcagatcatgatagtcgttttccccttcaccttgagcaagaagatcatcaccaaccacctagtttacaagttccacgcaagggaaaccgca |
219 |
Q |
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| T |
37335925 |
ccattgcgtgcagatcatgatagtcgttttccccttcaccttgagcaagaagatcatcaccaaccacctagtttacaagttccacgcaagggaaaccgca |
37335826 |
T |
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| Q |
220 |
tcagccaaccaccgcgtggaggctcgcgcaaaaagcatcgagatcaagatcttcggccaggcaaatcaagggtaaattttcaagagccatcagtaatacc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37335825 |
tcagccaaccaccgcgtggaggctcgcgcaaaaagcatcgagatcaagatcttcggccaggcaaatcaagggtaaattttcaagagccatcagtaatacc |
37335726 |
T |
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| Q |
320 |
accaccgcttggtcaccctcctgagcctcggcggcaattgacaccacaccaagagcggcgtcacggtggtataaggtttcctaaagaacaaaaatcacca |
419 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37335725 |
accaccgcttgatcaccctcctgagcctcggcggcaattgacaccgcaccaagagcggcgtcatggtggtataaggtttcctaaagaacaaaaatcacca |
37335626 |
T |
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| Q |
420 |
cctttaacttggatgggcgcttgcttgtgtgtaatattttggcttatcattatcataggaggcataatagtcct |
493 |
Q |
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| T |
37335625 |
cctttaacttggatgggcgcttgcttgtgtgtaatattttggcttatcattatcataggaggcataatagtcct |
37335552 |
T |
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