View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_22 (Length: 477)

Name: NF19380_low_22
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_22
NF19380_low_22
[»] chr6 (3 HSPs)
chr6 (18-252)||(2422775-2423009)
chr6 (389-470)||(2423128-2423209)
chr6 (271-314)||(2423010-2423053)
[»] chr4 (1 HSPs)
chr4 (394-466)||(21059223-21059295)
[»] scaffold0854 (1 HSPs)
scaffold0854 (400-466)||(770-836)
[»] chr5 (1 HSPs)
chr5 (394-443)||(42454987-42455036)
[»] chr3 (1 HSPs)
chr3 (394-455)||(7754464-7754525)
[»] chr2 (1 HSPs)
chr2 (394-455)||(37133961-37134022)
[»] chr1 (1 HSPs)
chr1 (394-455)||(12159026-12159087)
[»] chr7 (1 HSPs)
chr7 (394-462)||(12087138-12087206)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 2422775 - 2423009
Alignment:
Q  18 ttttaagcccattttttgttgaatgaaattacgaaccattgtctgaaaaaccaattgttcatgcaagttggatttaaaggtttgaaatatcgttttgttc 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2422775 ttttaagcccattttttgttgaatgaaattacaaaccattgtctgaaaaaccaattgttcatgcaagttggatttaaaggtttgaaatatcgttttgttc 2422874  T
Q  118 aaattgggattaggattgcttgatgatgattttaagtgaagtggatattactttttcaaaagaagcaatagtttcaaactttatctcactttattcaagc 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2422875 aaattgggattaggattgcttgatgatgatttttagtgaagtggatattactttttcaaaagaagcaatagtttcaaaatttatctcactttattcaagc 2422974  T
Q  218 ctcgttacaaacttttggaagtccttgaatatccg 252  Q
    |||||||||||||||||||||||||||||||||||    
T  2422975 ctcgttacaaacttttggaagtccttgaatatccg 2423009  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 389 - 470
Target Start/End: Original strand, 2423128 - 2423209
Alignment:
Q  389 agaacattgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcctatg 470  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  2423128 agaatattgtcatgtgaagacaatttcattattgtgccttattgttgttctatgtctgattggtctaaattttgtgtctatg 2423209  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 2423010 - 2423053
Alignment:
Q  271 acgcaacatataaatatacgagtaattgactaattgtcactttc 314  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  2423010 acgcaacatataaatacacgagtaattgactaattgtcactttc 2423053  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 466
Target Start/End: Original strand, 21059223 - 21059295
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 466  Q
    ||||| |||| ||| ||| |||||| |||||| |||| ||| ||||||||||| |||||||| ||||||||||    
T  21059223 attgttgtgtgaaggcaaattcattgttgtgccttatcgtttttctatgtctatttggtctagattttgtgcc 21059295  T

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Target: scaffold0854 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 836 - 770
Alignment:
Q  400 gtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 466  Q
    |||| ||||||||||||||||||||| |||| ||| |||||| |||  ||||||||  |||||||||    
T  836 gtgtgaagacaatttcattattgtgccttatcgtttttctatatctggttggtctaggttttgtgcc 770  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 42454987 - 42455036
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgt 443  Q
    |||||||||| || |||||||||||||| | | |||||||||||||||||    
T  42454987 attgtcgtgtgaaaacaatttcattattataccttattgttgttctatgt 42455036  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 7754464 - 7754525
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 455  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| ||||||||||  ||||||||    
T  7754464 attgttgtgtgaagacaatttcattgttgtgctttatcgtttttctatgtctctttggtcta 7754525  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 37134022 - 37133961
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 455  Q
    ||||| |||| ||| ||||||||||||||||| |||| ||| ||||||||||  ||||||||    
T  37134022 attgttgtgtgaaggcaatttcattattgtgccttatcgtttttctatgtctgtttggtcta 37133961  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 12159026 - 12159087
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 455  Q
    ||||| |||| |||||||||||||| |||||| ||||  || ||||||||||| ||||||||    
T  12159026 attgttgtgtgaagacaatttcattgttgtgccttatcctttttctatgtctatttggtcta 12159087  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 12087138 - 12087206
Alignment:
Q  394 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttg 462  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| |||||||||   ||||||||| |||||    
T  12087138 attgttgtgtgaagacaatttcattgttgtgccttatcgtttttctatgtcggtttggtctaagttttg 12087206  T

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