View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_23 (Length: 477)
Name: NF19380_low_23
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 13881801 - 13882261
Alignment:
| Q |
1 |
tttatataagggtataatttagacattataattttagtagagtacaatcatactgaatgaaaggtaactgtgctaattatacactaattatacaacttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13881801 |
tttatataagggtataatttagacattataattttagtagagtacaatcatactgaatgaaaggtaactgtgctaattatacaataattatacaacttga |
13881900 |
T |
|
| Q |
101 |
-------aactacagagaaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggctt |
193 |
Q |
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| T |
13881901 |
aagttgaaactacagagaaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggctt |
13882000 |
T |
|
| Q |
194 |
cacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgtt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882001 |
cacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatcagcttcaccttcactttcagccttattatcatg-- |
13882098 |
T |
|
| Q |
294 |
ctgctgcttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactt |
393 |
Q |
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| T |
13882099 |
-------ttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactt |
13882191 |
T |
|
| Q |
394 |
tcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccacaggtt |
463 |
Q |
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| T |
13882192 |
tcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccccaggtt |
13882261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 455
Target Start/End: Original strand, 16024464 - 16024735
Alignment:
| Q |
196 |
cgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
295 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
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| Q |
296 |
gc-------tgct--tct-----gca-tcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatga |
380 |
Q |
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| |||| ||| ||| ||||| | ||||| ||||| ||||||||||||||| | ||| |||||| ||||| ||| |||| |||| |
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| T |
16024563 |
ccatcatcatgctcttcttgagagcactcctctc--catcagcagattcacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatga |
16024660 |
T |
|
| Q |
381 |
cctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttc |
455 |
Q |
| |
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| T |
16024661 |
cctctgaggactttcttccccttcatcatcagcatctgcataattttctcctctggcttcaccacaaacttcttc |
16024735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 404
Target Start/End: Original strand, 13883806 - 13884011
Alignment:
| Q |
203 |
aaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
302 |
Q |
| |
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||||||||||| || |||||||| ||||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| || | |
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| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
|
| Q |
303 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
397 |
Q |
| |
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| ||| || | |||||| ||||| |||||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||||| |||| |
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| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
|
| Q |
398 |
ccccttc |
404 |
Q |
| |
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||||||| |
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| T |
13884005 |
ccccttc |
13884011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 456
Target Start/End: Complemental strand, 14397598 - 14397456
Alignment:
| Q |
314 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagc |
413 |
Q |
| |
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|||||| | |||||| ||||| |||||| || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaag |
14397499 |
T |
|
| Q |
414 |
atccatgtagttttctcctctggcttcaccacaaacttcttcc |
456 |
Q |
| |
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|||||| || |||||| ||| |||||||||||||||||||| |
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| T |
14397498 |
atccatataattttcttctcctccttcaccacaaacttcttcc |
14397456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 456
Target Start/End: Complemental strand, 14391312 - 14391173
Alignment:
| Q |
314 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag |
412 |
Q |
| |
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|||||||| |||||| | |||||||||||| | |||||| |||| ||||| ||||||| ||||||| |||||||||||| |||||||||||| |
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| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- |
14391216 |
T |
|
| Q |
413 |
catccatgtagttttctcctctggcttcaccacaaacttcttcc |
456 |
Q |
| |
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||||| || |||||| ||||||||| |||||||| ||||||| |
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| T |
14391215 |
-ttccatataattttcttctctggctttaccacaaatttcttcc |
14391173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 14393221 - 14393132
Alignment:
| Q |
201 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
295 |
Q |
| |
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|||||||||||||||| |||||||||||||||| | | |||| | |||| | | ||||||||||||||||||||||||| ||||| ||||| |
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| T |
14393221 |
agaaaatggcaatgacattccatctccttcaac---aggggcattagccatcat--ttagcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
381 |
cctctgaggactttcttccccttcatcatcagc |
413 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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