View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_25 (Length: 461)
Name: NF19380_low_25
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 42032773 - 42032426
Alignment:
| Q |
9 |
acatcatcactacatacacccagctcctccaccaaatgaattccatataacaccccgtcgaccataatctcttttaacatcattaaataacatccaaaca |
108 |
Q |
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| T |
42032773 |
acatcatcactacatacactcagctcctccaccaaatgaattccatataacaccccgtcgaccataatctcttttaacatcgttaaataacatccaaaca |
42032674 |
T |
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| Q |
109 |
ttatgaacccatttgtgttggtctggtgttgttggtttgcgatatttgagtgttctcttttcgattctcaccggtgccaattttagtaggctagtttgac |
208 |
Q |
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| T |
42032673 |
ttatgaacccatttgtgttggtctggtgttgttggttt-cgatatttgagtgttctcttttcgattctcaccggtgccaattttagtaggctagtttgac |
42032575 |
T |
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| Q |
209 |
ttcttnnnnnnncatcaaacattgtcttttttgtagaaataaaaacacaatttattttgttcaaaatgtttgtaaggtct----------ttcgaataca |
298 |
Q |
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| T |
42032574 |
ttcttaaaaaaacatcaaacattgtcttttttgtagaaataaaaacacaatttattttgttcaaaatgtttgtaaggtcttttttggatcttcgaataca |
42032475 |
T |
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| Q |
299 |
ttagtgttttagtctcttaactatttatttgatttcactttggtctacc |
347 |
Q |
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| T |
42032474 |
ttagtgttttaatctcttaactatttatttgatttcactttgctctacc |
42032426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 42032363 - 42032330
Alignment:
| Q |
410 |
cattggatcttgcatattactatatcttataacc |
443 |
Q |
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| T |
42032363 |
cattggatcttgcatattactatatcttataacc |
42032330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 44745989 - 44745944
Alignment:
| Q |
168 |
ttcgattctcaccggtgccaattttagtaggctagtttgacttctt |
213 |
Q |
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| T |
44745989 |
ttcgattctccccagtgccaattttggtaggctagtttggcttctt |
44745944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 6127994 - 6127949
Alignment:
| Q |
168 |
ttcgattctcaccggtgccaattttagtaggctagtttgacttctt |
213 |
Q |
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| T |
6127994 |
ttcgattctccccggtgccaattttggtgggctagtttggcttctt |
6127949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 32106636 - 32106680
Alignment:
| Q |
169 |
tcgattctcaccggtgccaattttagtaggctagtttgacttctt |
213 |
Q |
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| T |
32106636 |
tcgattctctccggtgccaatttcagtgggctagtttggcttctt |
32106680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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