View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_low_26 (Length: 459)
Name: NF19380_low_26
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 38835766 - 38836189
Alignment:
| Q |
17 |
acaatggactatggtgtgatgtactttacagaatagattgtggaaatataaccagtgatgtactttatatttatttatcctttgaagcacactcatttac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835766 |
acaatggactatggtgtgatgtactttacagaatagattgtggaaatataaccagtgatgtactttatatttatttatcctttgaagcacactcatttac |
38835865 |
T |
|
| Q |
117 |
cttagtatatttcttttgaagagatccaccttattatatttaataaatcctttgatgataattgataagtgtcgtattttcatcaaatagataaaaatac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835866 |
cttagtatatttcttttgaagagatccaccttagtatatttaataaatcctttgatgataattgataagtgtcgtattttcatcaaatagataaaaatac |
38835965 |
T |
|
| Q |
217 |
tgaaaaagagaatgtgtcatttcaatacctagtcacatatcacaataatattaaaattacaaactcattagtgtgaaattatacagataagaaaataacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835966 |
tgaaaaagagaatgtgtcatttcaatacctagtcacatatcacaataatattaaaattacaaactcattagtgtgaaattatacagataagaaaataacc |
38836065 |
T |
|
| Q |
317 |
ataatattcctacttttcatttatattatatcgttctctgaaatctcgtgttcgatctttcttctttannnnnnnnaaaattaaataatttacttgttgg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38836066 |
ataatattcctacttttcatttatattatatcgttctctgaaatctcgtgttcgatctttcttcttta-tttttttaaaattaaataatttacttgttgg |
38836164 |
T |
|
| Q |
417 |
ctgtgttggtttctttttatttcac |
441 |
Q |
| |
|
|||||||| ||| ||| |||||||| |
|
|
| T |
38836165 |
ctgtgttgttttttttgtatttcac |
38836189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 38849261 - 38849362
Alignment:
| Q |
179 |
tgataagtgtcgtattttcatcaaatagataaaaatactgaaaaagagaat----gtgtcatttcaatacctagtcacatatcacaataatattaaaatt |
274 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| |||||||||||||| | || |||| |||||||||||| | | |||||||||||||||||| |
|
|
| T |
38849261 |
tgataagtgtcgtattctcatcaaatagagaaaa---ctgaaaaagagaattaatgggtgatttaaatacctagtcatagagcacaataatattaaaatt |
38849357 |
T |
|
| Q |
275 |
acaaa |
279 |
Q |
| |
|
||||| |
|
|
| T |
38849358 |
acaaa |
38849362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University