View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_29 (Length: 441)
Name: NF19380_low_29
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 3352047 - 3351759
Alignment:
| Q |
16 |
attttgtcatcttaggtttagtgaagttactagggtctaggcgagcaagagttatttctttgcaaggaaggatattgtgttagcaaataaaggaaaagag |
115 |
Q |
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| T |
3352047 |
attttgtcatcttaggtttagtgaagttactagggtctaggcaagcaagagttatttctttgcaaggaaggatattgtgtgagaaaataaaggaaaagag |
3351948 |
T |
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| Q |
116 |
aggatatatatacacaaaatgttaagatatcgtcaagcataaattcatgtcttcctcaaacattagaagtgcgattttgataagaacaaaataatggtat |
215 |
Q |
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| T |
3351947 |
aggatatatatacacaaaatgttaagataacgtcaaccataaattcatgtctttctcaaacattagaagtgcgattttgataagaacaaaataatggtat |
3351848 |
T |
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| Q |
216 |
gctagtgcctttgcatatatccctccttccacaattgtatgacaatgtgacctttgcatatattcctccttccacaaacttcacttctc |
304 |
Q |
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| T |
3351847 |
gctagtgcctttgcatatatccctccttccacaattgtatgacaatgtgacctttgcatatattcctccttccacaaacttcacttctc |
3351759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 3351694 - 3351612
Alignment:
| Q |
305 |
atccttagaaatttgacatatattgctggaaatcttttgtaggtaaatataaaaaagttgacatctagtaattgaacaccata |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3351694 |
atccttagaaatttgacatatattgctggaaatcttttgtaggtaaatataaaaaagttgacatctagtaattgaacaacata |
3351612 |
T |
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