View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_3 (Length: 737)
Name: NF19380_low_3
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 193 - 725
Target Start/End: Complemental strand, 13795272 - 13794740
Alignment:
| Q |
193 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
292 |
Q |
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| T |
13795272 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcagctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
13795173 |
T |
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| Q |
293 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
392 |
Q |
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| T |
13795172 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
13795073 |
T |
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| Q |
393 |
gagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
492 |
Q |
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| T |
13795072 |
gagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
13794973 |
T |
|
| Q |
493 |
caacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaaca |
592 |
Q |
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| T |
13794972 |
caacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaaca |
13794873 |
T |
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| Q |
593 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
692 |
Q |
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| T |
13794872 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
13794773 |
T |
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| Q |
693 |
aatcttgttttattttcaaaattacctttgcta |
725 |
Q |
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| T |
13794772 |
aatcttgttttattttcaaaattacctttgcta |
13794740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 13795862 - 13795677
Alignment:
| Q |
16 |
gaaacaagaaagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttc |
115 |
Q |
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| T |
13795862 |
gaaacaagaaagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttc |
13795763 |
T |
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| Q |
116 |
aaatcccactgcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaat |
201 |
Q |
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| T |
13795762 |
aaatcccacggcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtcttgataattaaaat |
13795677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 149 - 381
Target Start/End: Original strand, 16025213 - 16025445
Alignment:
| Q |
149 |
atttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatac |
248 |
Q |
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|||||||| ||||||||||||||||||||| | | ||||| |||| ||||||||||| || ||||| | ||||||||||| ||| | ||| | || ||| |
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| T |
16025213 |
atttgacaatctaacaacttatggcttagcaatcaggtcttggtaactaaaatatgagcatcagttttattgtagaaagaacatcatacattaactgtac |
16025312 |
T |
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| Q |
249 |
atgcactatgagctgcatcaatcatgatataatactcgagtaaattcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatct |
348 |
Q |
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| T |
16025313 |
ccacactacaggctggatgaatcatgttataacacttgagtgaagtctaggagagaaaacatcacatagaagtgaaaatctagtttgtaacacgatgtct |
16025412 |
T |
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| Q |
349 |
taataattcgacaactgatagttgatggcacaa |
381 |
Q |
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| T |
16025413 |
ctagaattcgtcaactgacagttgatggcacaa |
16025445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 14366358 - 14366254
Alignment:
| Q |
16 |
gaaacaagaaagacggtttttcattgaatatgagttatt-tgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgtt |
114 |
Q |
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|||||||||||| | | ||||||||||||||||| | | ||||| | |||||||||||||||||||||||| ||| ||| ||| |||||||||||||| |
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| T |
14366358 |
gaaacaagaaagccagattttcattgaatatgagaaagtgtgaaagcgatcattctcatcaatgttatcaatcatgaatcgcgagaaattgcaatttgtt |
14366259 |
T |
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| Q |
115 |
caaat |
119 |
Q |
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||||| |
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| T |
14366258 |
caaat |
14366254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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