View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_30 (Length: 440)
Name: NF19380_low_30
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 31161164 - 31160934
Alignment:
| Q |
13 |
tagggagtacctctaccttggtggcttggtttcttctgggttgtccattcttatatggtttcactttgcttctgccatctttggaggttcaatggttctt |
112 |
Q |
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| T |
31161164 |
tagggagtacctctaccttggtggcttggtttcttctgggttgtccattcttatatggtttcaccttgcttctgccatctttggaggttcaatggttctt |
31161065 |
T |
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| Q |
113 |
tcaagtttaagttgtattttgggctcttttatccttgaagcatgctctgaccttgtttagtgatttggttgcagnnnnnnncgggaatctagccatcatt |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
31161064 |
tcaagtttgagttgtattttgggctcttttatccttgaagcatgctctgaccttgtttagtgatttggttgcagtttttttccggaatctagccatcatt |
31160965 |
T |
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| Q |
213 |
ttgaataattccggcaagagggctgaggagg |
243 |
Q |
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| T |
31160964 |
ttgaataattccggcaagagggctgaggagg |
31160934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 270 - 424
Target Start/End: Complemental strand, 31160907 - 31160753
Alignment:
| Q |
270 |
taattttcttaccaatcacacttgtttgactcttatcctataatctttggatgatagtaagatacaataacaattgtctgaagagtgttctcaacgtctt |
369 |
Q |
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| T |
31160907 |
taattttcttaccaatcacacttgtttgactcttatcctgtaatctttggatgatagtaagatacaataacaattgtctgaagagtgttctcaacgtctt |
31160808 |
T |
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| Q |
370 |
gaacttattcccaactatgcagttagtcatgtttctgctttataacacatgttga |
424 |
Q |
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| T |
31160807 |
gaacttattcccaactatgtagttagtcatgtttctgctttataacacatgttga |
31160753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 4214603 - 4214756
Alignment:
| Q |
270 |
taattttcttaccaatcacacttgtttgactcttatcctataatctttggatgatagtaagatacaataacaattgtctgaagagtgttctcaacgtctt |
369 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
4214603 |
taattttcttaccaatcaaacttgtttgactcgtatcctgtaatctttggatgatagtaagatacaataacagttgtttgaagagtgttctcaacgtctt |
4214702 |
T |
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| Q |
370 |
gaacttattcccaactatgcagttagtcatgtttctgctttataacacatgttga |
424 |
Q |
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|||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4214703 |
gaacttggtccc-actgtgcagttagtcatgtttctgctttataacacatgttga |
4214756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 4214030 - 4214124
Alignment:
| Q |
13 |
tagggagtacctctaccttggtggcttggtttcttctgggttgtccattcttatatggtttcactttgcttctgccatctttggaggttcaatgg |
107 |
Q |
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| T |
4214030 |
tagggagtacctctaccttggtggctttgtttcttctgggttgtccattcttatgtggttgcactttgcttctgccatctttggaggttcaatgg |
4214124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 4214336 - 4214374
Alignment:
| Q |
148 |
tgaagcatgctctgaccttgtttagtgatttggttgcag |
186 |
Q |
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| T |
4214336 |
tgaagcatgctctgaccttgtttactgatttggttgcag |
4214374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 41278021 - 41277950
Alignment:
| Q |
13 |
tagggagtacctctaccttggtggcttggtttcttctgggttgtccattcttatatggtttcactttgcttc |
84 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||| || |||||||| |
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| T |
41278021 |
tagggagtatctctaccttggtggcttgctttcttctgggttgtctattcttatgtggttgcattttgcttc |
41277950 |
T |
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