View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_31 (Length: 437)

Name: NF19380_low_31
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_31
NF19380_low_31
[»] chr8 (3 HSPs)
chr8 (3-124)||(41097686-41097802)
chr8 (328-403)||(41097992-41098067)
chr8 (164-224)||(41097828-41097888)
[»] chr4 (1 HSPs)
chr4 (192-220)||(49895225-49895253)
[»] chr1 (1 HSPs)
chr1 (192-220)||(6048101-6048129)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 41097686 - 41097802
Alignment:
Q  3 aaatccattgaataaataaggctaaattgcatatttagtcccttaacttaaccgaatgcctaaggtggatatacatagtaagtggtcaatcaaagacctc 102  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |     ||||||||||||||||||||||    
T  41097686 aaatcgattgaacaaataaggctaaattgcatacttagtcccttaacttaaccgaatatctaaggtggataca-----taagtggtcaatcaaagacctc 41097780  T
Q  103 attaaactgtataatattaacc 124  Q
    ||||||||||||||||||||||    
T  41097781 attaaactgtataatattaacc 41097802  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 41097992 - 41098067
Alignment:
Q  328 tcagtgaaatacctattcacaaattcccagcaacctattcgttaacatctcatctcaattttcagcctatttgcgt 403  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41097992 tcagtgaaatacctattcataaatttccagcaacctattcgttaacatctcatctcaattttcagcctattcgcgt 41098067  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 41097828 - 41097888
Alignment:
Q  164 acaaccattagatcatgcatgtatataaaatagtgaaccatcaacacctaattttttgtac 224  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  41097828 acaaccattagatcatgcatgtatacaaaatagtgaatcatcaacacctaattttttgtac 41097888  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 49895225 - 49895253
Alignment:
Q  192 aatagtgaaccatcaacacctaatttttt 220  Q
    |||||||||||||||||||||||||||||    
T  49895225 aatagtgaaccatcaacacctaatttttt 49895253  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 6048101 - 6048129
Alignment:
Q  192 aatagtgaaccatcaacacctaatttttt 220  Q
    |||||||||||||||||||||||||||||    
T  6048101 aatagtgaaccatcaacacctaatttttt 6048129  T

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