View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_36 (Length: 413)
Name: NF19380_low_36
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 41282643 - 41282372
Alignment:
| Q |
16 |
agatgggctctattacgtgtggcatagagagctagccatacgatactcaggtttctatcnnnnnnnatttccattttacccaaacttatcattatatctc |
115 |
Q |
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| T |
41282643 |
agatggactctattacgtgtggcatagagagctagccatacgatactcaggtttctgtctttttttatttctattttacccaaacttatcgttatatctc |
41282544 |
T |
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| Q |
116 |
ctactagcaaatgacctcaacgatggagtcttacatttccatctttattcaacgttccaataatgcggcgagtctgggtttatttatgagatagataaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41282543 |
ctactagcaaatgacctcaacgatggagtcttacatttccatctttattcaacgttctaataatgcggcgagtctgggtttatttatgagatagataaat |
41282444 |
T |
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| Q |
216 |
acatagatatattcgagaaattcatattttaataagtggatttcacttataagtctcatcacttgtgtcaat |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41282443 |
acatagatttattcgagaaattcatattttaataagtggatttcacttataagtctcatcacttgtgtcaat |
41282372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 41282343 - 41282241
Alignment:
| Q |
299 |
agtaaataatagaacaaatctagttagttatctagatnnnnnnnnnngaccatctctctagtgacatcttgtgacggggatgtacatcttcttttgtttt |
398 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41282343 |
agtaaataatagagcaaatctagttagttatctagataaaaaaaaaagaccatctctctagtgacatcttgtgacggggatgtacatcttcttttgtttt |
41282244 |
T |
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| Q |
399 |
tca |
401 |
Q |
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||| |
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| T |
41282243 |
tca |
41282241 |
T |
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