View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_38 (Length: 413)

Name: NF19380_low_38
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_38
NF19380_low_38
[»] chr5 (7 HSPs)
chr5 (10-396)||(15561105-15561491)
chr5 (316-357)||(2029053-2029094)
chr5 (316-363)||(24565574-24565621)
chr5 (316-363)||(24606610-24606657)
chr5 (316-362)||(39937907-39937953)
chr5 (316-360)||(4082994-4083038)
chr5 (316-360)||(40372163-40372207)
[»] chr4 (16 HSPs)
chr4 (10-315)||(22700093-22700397)
chr4 (10-315)||(22980134-22980438)
chr4 (10-315)||(22993720-22994024)
chr4 (316-396)||(6056966-6057046)
chr4 (315-362)||(20143279-20143326)
chr4 (316-362)||(13924794-13924840)
chr4 (316-354)||(21527034-21527072)
chr4 (319-357)||(26393404-26393442)
chr4 (316-363)||(2460848-2460895)
chr4 (316-363)||(24666130-24666177)
chr4 (316-362)||(13925650-13925696)
chr4 (316-362)||(14527577-14527623)
chr4 (320-362)||(32137988-32138030)
chr4 (316-362)||(35606642-35606688)
chr4 (316-356)||(21837390-21837430)
chr4 (316-364)||(25725807-25725855)
[»] chr7 (16 HSPs)
chr7 (320-392)||(37783452-37783524)
chr7 (316-377)||(28007158-28007219)
chr7 (316-360)||(46491691-46491735)
chr7 (316-362)||(28007814-28007860)
chr7 (316-362)||(41965778-41965824)
chr7 (316-357)||(1512566-1512607)
chr7 (317-362)||(44876935-44876980)
chr7 (316-356)||(3315470-3315510)
chr7 (316-364)||(18569018-18569066)
chr7 (316-364)||(18591799-18591847)
chr7 (316-364)||(18619838-18619886)
chr7 (316-364)||(18632895-18632943)
chr7 (316-364)||(18645607-18645655)
chr7 (316-364)||(18648192-18648240)
chr7 (316-364)||(18652892-18652940)
chr7 (320-396)||(42818520-42818596)
[»] chr8 (11 HSPs)
chr8 (320-392)||(9929205-9929277)
chr8 (316-396)||(4402254-4402334)
chr8 (315-363)||(22632322-22632370)
chr8 (311-363)||(22632968-22633020)
chr8 (316-363)||(16911046-16911093)
chr8 (316-364)||(9277197-9277245)
chr8 (316-362)||(31713869-31713915)
chr8 (330-392)||(42664771-42664833)
chr8 (316-357)||(42094010-42094051)
chr8 (316-364)||(31713397-31713445)
chr8 (316-392)||(40599888-40599964)
[»] chr3 (16 HSPs)
chr3 (316-365)||(4706954-4707003)
chr3 (316-377)||(24511995-24512056)
chr3 (316-357)||(33761971-33762012)
chr3 (316-357)||(46883765-46883806)
chr3 (316-364)||(20807938-20807986)
chr3 (316-364)||(20808606-20808654)
chr3 (320-372)||(27983032-27983083)
chr3 (317-357)||(38557237-38557277)
chr3 (316-363)||(9830573-9830620)
chr3 (316-362)||(15287568-15287614)
chr3 (316-362)||(24515014-24515060)
chr3 (319-365)||(33762686-33762732)
chr3 (316-362)||(54308454-54308500)
chr3 (316-357)||(4706278-4706319)
chr3 (316-357)||(47571197-47571238)
chr3 (316-357)||(49349677-49349718)
[»] chr1 (9 HSPs)
chr1 (316-365)||(24847784-24847833)
chr1 (316-365)||(24848424-24848473)
chr1 (316-363)||(26240871-26240918)
chr1 (316-363)||(26240115-26240162)
chr1 (316-362)||(12449313-12449359)
chr1 (319-356)||(14166914-14166951)
chr1 (316-357)||(16449556-16449597)
chr1 (316-357)||(16459130-16459171)
chr1 (316-357)||(39682320-39682361)
[»] chr2 (7 HSPs)
chr2 (316-365)||(29388946-29388995)
chr2 (316-396)||(10173937-10174017)
chr2 (316-362)||(127034-127080)
chr2 (316-362)||(7754968-7755014)
chr2 (316-373)||(9157016-9157073)
chr2 (316-365)||(29388284-29388333)
chr2 (316-364)||(4879057-4879105)
[»] chr6 (1 HSPs)
chr6 (316-363)||(16718994-16719041)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 15561105 - 15561491
Alignment:
Q  10 ataattctcaataatgattccctcatattcatgtgattctactgaagaatgaactttgtcactcagctataagttccttaactactctaaaagatatgta 109  Q
    |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  15561105 ataactctcaataatgattccctcatattcatgtgattctgctaaagaatgaactttgtcactcagctataagttccttaactactccaaaagatatgca 15561204  T
Q  110 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcgtaaaatagcttgcttgat 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15561205 attagtacgatgtttaagctacttaactaagaaacgtatcaaattaaatattaaggcaacatattcaagagataaacatgcgtaaaatagcttgcttgat 15561304  T
Q  210 tggttgattatattaaaaagaaattacaaatcaaatattaataggcaaacaccacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15561305 tggttgattatattaaaaagaaattacaaatcaaatattaataggcaaacaccacttctatcggccaaaacagcgtagcctacaaaattctactttgctt 15561404  T
Q  310 gactatgtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15561405 gactatgtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 15561491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 2029094 - 2029053
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  2029094 gtggattctagggtgagggctcaattaagtccctcaccggtg 2029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 24565574 - 24565621
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||||||||||||| || | ||| |||||||||||||||||||    
T  24565574 gtggattctagggtgagggttcaattaaatccctcaccggtggaccat 24565621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 24606610 - 24606657
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||||||||||||| || | ||| |||||||||||||||||||    
T  24606610 gtggattctagggtgagggttcaattaaatccctcaccggtggaccat 24606657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 39937953 - 39937907
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  39937953 gtggattctagggtgagggttcagttaagtccctcaccggtggacca 39937907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 4082994 - 4083038
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggac 360  Q
    |||||||||||||||||||  ||| ||||||||||| ||||||||    
T  4082994 gtggattctagggtgagggagctattaagtccctcatcggtggac 4083038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 40372207 - 40372163
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggac 360  Q
    ||||||||||||||||||| || | ||||| ||||||||||||||    
T  40372207 gtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 22700397 - 22700093
Alignment:
Q  10 ataattctcaataatgattccctcatattcatgtgattctactgaagaatgaactttgtcactcagctataagttccttaactactctaaaagatatgta 109  Q
    |||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||    
T  22700397 ataactctcaataatgattccctcttattcatgcgattctgctgaagaatgaactttgtcactcagctgtaagtttcttaactactccaaaa-atatgta 22700299  T
Q  110 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcgtaaaatagcttgcttgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  22700298 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcataaaataacctgcttgat 22700199  T
Q  210 tggttgattatattaaaaagaaattacaaatcaaatattaataggcaaacaccacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 309  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22700198 tggttgattatattaaaaaaaaattacaaatcaaatatttataggcaaacactacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 22700099  T
Q  310 gactat 315  Q
    ||||||    
T  22700098 gactat 22700093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 22980134 - 22980438
Alignment:
Q  10 ataattctcaataatgattccctcatattcatgtgattctactgaagaatgaactttgtcactcagctataagttccttaactactctaaaagatatgta 109  Q
    |||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||    
T  22980134 ataactctcaataatgattccctcttattcatgcgattctgctgaagaatgaactttgtcactcagctgtaagtttcttaactactccaaaa-atatgta 22980232  T
Q  110 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcgtaaaatagcttgcttgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  22980233 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcataaaataacctgcttgat 22980332  T
Q  210 tggttgattatattaaaaagaaattacaaatcaaatattaataggcaaacaccacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 309  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22980333 tggttgattatattaaaaaaaaattacaaatcaaatatttataggcaaacactacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 22980432  T
Q  310 gactat 315  Q
    ||||||    
T  22980433 gactat 22980438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 22993720 - 22994024
Alignment:
Q  10 ataattctcaataatgattccctcatattcatgtgattctactgaagaatgaactttgtcactcagctataagttccttaactactctaaaagatatgta 109  Q
    |||| ||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| |||| |||||||    
T  22993720 ataactctcaataatgattccctcttattcatgcgattctgctgaaaaatgaactttgtcactcagctgtaagtttcttaactactccaaaa-atatgta 22993818  T
Q  110 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcgtaaaatagcttgcttgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  22993819 attagtacgatgtttaagctacttaactaagaaacgtatgaaattaaatattaaggcaacatattaaagagataaacatgcataaaataacctgcttgat 22993918  T
Q  210 tggttgattatattaaaaagaaattacaaatcaaatattaataggcaaacaccacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 309  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22993919 tggttgattatattaaaaaaaaattacaaatcaaatatttataggcaaacactacttctatcggccaaaacagcgtagcctacaaaattctgctttgctt 22994018  T
Q  310 gactat 315  Q
    ||||||    
T  22994019 gactat 22994024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 6057046 - 6056966
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 396  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  6057046 gtggattctagggtgagggttctactaagtccctcaccggtggaccacttcgaacaaccattaagaaccattaaattaatc 6056966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 20143279 - 20143326
Alignment:
Q  315 tgtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  20143279 tgtggattctagggtgagggctcaactaagtccctcaccggtgtacca 20143326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 13924794 - 13924840
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||    
T  13924794 gtggattctagggtgagggctcaattaaatccctcaccggtggacca 13924840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 21527072 - 21527034
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccg 354  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21527072 gtggattctagggtgagggctctattaagtccctcaccg 21527034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 26393442 - 26393404
Alignment:
Q  319 gattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26393442 gattctagggtgagggctctattaagtccctcaccggtg 26393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 2460848 - 2460895
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    |||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  2460848 gtggattctaggatgagggctgaactaagtccctcaccagtggaccat 2460895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 24666130 - 24666177
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||||||||||||| || | ||||||||||||||||| |||||    
T  24666130 gtggattctagggtgagggatcaattaagtccctcaccggtgaaccat 24666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 13925696 - 13925650
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||  ||||||| || ||||||||||||||||||||||||    
T  13925696 gtggattctaaagtgagggatcaactaagtccctcaccggtggacca 13925650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 14527623 - 14527577
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||||    
T  14527623 gtggattctagggtgagggatcaattaagtccctcaccggtgaacca 14527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 32137988 - 32138030
Alignment:
Q  320 attctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32137988 attctagggtgagggctctaccaagttcctctccggtggacca 32138030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 35606688 - 35606642
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||| ||||||||||||||  ||||||||||||||| ||||||||||    
T  35606688 gtgggttctagggtgagggagctactaagtccctcatcggtggacca 35606642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 21837390 - 21837430
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggt 356  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  21837390 gtggattctagggtgagggtccaactaagtccctcaccggt 21837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 25725855 - 25725807
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    ||||| |||||||||||||  | | ||||||||||||||||||||||||    
T  25725855 gtggagtctagggtgagggagcaattaagtccctcaccggtggaccatt 25725807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 37783524 - 37783452
Alignment:
Q  320 attctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagatt 37783452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 28007158 - 28007219
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccatt 377  Q
    |||||||||||||||||||  | | ||||||||||||||||||||||| || ||||||||||    
T  28007158 gtggattctagggtgagggagcaattaagtccctcaccggtggaccatgtctaacaaccatt 28007219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 46491735 - 46491691
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggac 360  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  46491735 gtggattctagggtgagggttcaactaagtccctcaccggtggac 46491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 28007860 - 28007814
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||| ||  ||| ||||||||||||||||||||||    
T  28007860 gtggattctagggtgatggagctattaagtccctcaccggtggacca 28007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 41965824 - 41965778
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||||||  | | ||||||||||||||||||||||    
T  41965824 gtggattctagggtgagggtccaattaagtccctcaccggtggacca 41965778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 1512607 - 1512566
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||| |||||| ||||| |||||||||||    
T  1512607 gtggattctagggtgagagctctattaagttcctcaccggtg 1512566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 44876980 - 44876935
Alignment:
Q  317 tggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||||| || | |||||||||||||| |||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcaccgatggacca 44876935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 3315510 - 3315470
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggt 356  Q
    |||||||||| ||||||||||| | ||||||||||||||||    
T  3315510 gtggattctaaggtgagggctcaattaagtccctcaccggt 3315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 18569066 - 18569018
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18569066 gtggattctagggtgaaggtcctattaaatccctcaccggtggaccatt 18569018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 18591847 - 18591799
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18591847 gtggattctagggtgaaggtcctagtaaatccctcaccggtggaccatt 18591799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18619838 - 18619886
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18619838 gtggattctagggtgaaggtcctagtaaatccctcaccggtggaccatt 18619886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18632895 - 18632943
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18632895 gtggattctagggtgaaggtcctagtaaatccctcaccggtggaccatt 18632943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18645607 - 18645655
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18645607 gtggattctagggtgaaggtcctagtaaatccctcaccggtggaccatt 18645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18648192 - 18648240
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18648192 gtggattctagggtgaaggtcctagtaaatccctcaccggtggaccatt 18648240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18652892 - 18652940
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| ||  ||| ||| ||||||||||||||||||||    
T  18652892 gtggattctagggtgaaggtcctattaaatccctcaccggtggaccatt 18652940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 42818596 - 42818520
Alignment:
Q  320 attctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 396  Q
    ||||||||||||||| || | ||||||||||||||||||| || ||  || ||| | | |||| |||||||||||||    
T  42818596 attctagggtgagggttcaattaagtccctcaccggtggatcacttataataacaaataagaatcattagattaatc 42818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 9929205 - 9929277
Alignment:
Q  320 attctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagatt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||||||    
T  9929205 attctaaggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagatt 9929277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 4402334 - 4402254
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 396  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||| || ||||||| |   ||| ||||||||||||||    
T  4402334 gtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaacaagagccattagattaatc 4402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 22632322 - 22632370
Alignment:
Q  315 tgtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    |||||||||||||||||||| || | |||||||||||||||||||||||    
T  22632322 tgtggattctagggtgagggatcaattaagtccctcaccggtggaccat 22632370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 22633020 - 22632968
Alignment:
Q  311 actatgtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    |||| ||||||||||||||||||| || | |||||||||||||||||||||||    
T  22633020 actaggtggattctagggtgagggatcaattaagtccctcaccggtggaccat 22632968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 16911093 - 16911046
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||    
T  16911093 gtggattctagggtgagggctcaattaagtccctcaccggtgtaccat 16911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 9277197 - 9277245
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    ||||||||||||||||||| ||||  |||||||||| ||||||||||||    
T  9277197 gtggattctagggtgagggttctaacaagtccctcatcggtggaccatt 9277245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 31713915 - 31713869
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||||||    
T  31713915 gtggattctagggtgagggttctaacaagtccctcacccgtggacca 31713869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 42664833 - 42664771
Alignment:
Q  330 gagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagatt 392  Q
    ||||| |||| ||||||||||  |||||||||| ||||||||||||| ||||  |||||||||    
T  42664833 gagggttctattaagtccctcgtcggtggaccacttcgaacaaccatcgagagtcattagatt 42664771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 42094010 - 42094051
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  42094010 gtggattctagggtgagggatcaattaagtccctcaccggtg 42094051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 31713397 - 31713445
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| || ||||  |||||||||| ||||||||||||    
T  31713397 gtggattctagggtgaaggttctaacaagtccctcatcggtggaccatt 31713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 40599888 - 40599964
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagatt 392  Q
    |||||||||||| |||||| || |  ||||||||||||||||| |||| | ||| ||   |||||||||||||||||    
T  40599888 gtggattctaggatgagggttcaaacaagtccctcaccggtggtccatcttgaataatagttgagaaccattagatt 40599964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 4707003 - 4706954
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  4707003 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 4706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 24511995 - 24512056
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccatt 377  Q
    ||||||| |||||||||||  | | ||||||||||||||||||||||| || ||||||||||    
T  24511995 gtggattttagggtgagggagcaattaagtccctcaccggtggaccatgtctaacaaccatt 24512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 33761971 - 33762012
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  33761971 gtggattctagggtgagggctctattaagttcctcaccggtg 33762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 46883765 - 46883806
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  46883765 gtggcttctagggtgagggctctattaagtccctcaccggtg 46883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 20807938 - 20807986
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||||||    
T  20807938 gtggattctagggtgagggttcaattaagtccctcaccggtgtaccatt 20807986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 20808654 - 20808606
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||||||    
T  20808654 gtggattctagggtgagggttcaagtaagtccctcaccggtgtaccatt 20808606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 27983083 - 27983032
Alignment:
Q  320 attctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaa 372  Q
    ||||||||||||||||||||||||||| |||| |||||||||| || ||||||    
T  27983083 attctagggtgagggctctactaagtctctca-cggtggaccacttggaacaa 27983032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 38557277 - 38557237
Alignment:
Q  317 tggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  38557277 tggattttagggtgagggctctattaagtccctcaccggtg 38557237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 9830573 - 9830620
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||| ||||||||| || | |||||||||||||||||||||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggaccat 9830620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 15287568 - 15287614
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||||||  | | ||||||||||||||||||||||    
T  15287568 gtggattctagggtgagggtccaattaagtccctcaccggtggacca 15287614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 24515060 - 24515014
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    |||||||||||||||||||   || ||||||||||||||||||||||    
T  24515060 gtggattctagggtgagggagttattaagtccctcaccggtggacca 24515014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 33762732 - 33762686
Alignment:
Q  319 gattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||| |||||||| |||| ||||||||||||||||| |||||||    
T  33762732 gattctaaggtgagggttctattaagtccctcaccggtgtaccattt 33762686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 54308454 - 54308500
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaacca 54308500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 4706278 - 4706319
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  4706278 gtggattttagggtgagggctctattaagtacctcaccggtg 4706319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 47571197 - 47571238
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  47571197 gtggattctagggtgagggatcaattaagtccctcaccggtg 47571238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 49349677 - 49349718
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  49349677 gtggattctagggtgagggatcaattaagtccctcaccggtg 49349718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 24847784 - 24847833
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  24847784 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24847833  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 24848473 - 24848424
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  24848473 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24848424  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 26240918 - 26240871
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||    
T  26240918 gtggattctagggtgagggttcaattaagtccctcaccggtggaccat 26240871  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 26240115 - 26240162
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    ||||||||||||||||||| || | ||||||||||||||||| |||||    
T  26240115 gtggattctagggtgagggatcaattaagtccctcaccggtgaaccat 26240162  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 12449359 - 12449313
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||| ||||||||||| || | ||||||||||||||||||||||    
T  12449359 gtggattttagggtgagggatcaattaagtccctcaccggtggacca 12449313  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 14166951 - 14166914
Alignment:
Q  319 gattctagggtgagggctctactaagtccctcaccggt 356  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggt 14166914  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 16449556 - 16449597
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  16449556 gtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 16459130 - 16459171
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  16459130 gtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 39682320 - 39682361
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtg 357  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  39682320 gtggattctagggtgagggctctatcaagtccttcaccggtg 39682361  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 29388995 - 29388946
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||| |||||||||||||||| |||||||||||||| || |||||||    
T  29388995 gtggattttagggtgagggctctattaagtccctcaccgatgtaccattt 29388946  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 10173937 - 10174017
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 396  Q
    ||||||||||||||||||| |||  ||||||||||||||||| ||||  | ||||||| |   ||| ||||||||||||||    
T  10173937 gtggattctagggtgagggttctgttaagtccctcaccggtgaaccaccttgaacaacaaacaagagccattagattaatc 10174017  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 127034 - 127080
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| || ||||||||||||| | ||||||||    
T  127034 gtggattctagggtgagggttcaactaagtccctcatcagtggacca 127080  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 7755014 - 7754968
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggacca 362  Q
    ||||||||||||||||||| || | ||||||| ||||||||||||||    
T  7755014 gtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 9157016 - 9157073
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaac 373  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||| |||| || |||||||    
T  9157016 gtggattctagggcgagggttctattaaatccctcaccggtgaaccactttgaacaac 9157073  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 29388284 - 29388333
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccattt 365  Q
    ||||||||||| |||||||||||| ||||||| |||||| || |||||||    
T  29388284 gtggattctagagtgagggctctattaagtccttcaccgatgtaccattt 29388333  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 4879057 - 4879105
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccatt 364  Q
    |||||||||||||||| || ||||  |||||||||| ||||||||||||    
T  4879057 gtggattctagggtgaaggttctaacaagtccctcatcggtggaccatt 4879105  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 16719041 - 16718994
Alignment:
Q  316 gtggattctagggtgagggctctactaagtccctcaccggtggaccat 363  Q
    |||||||||||||||| || || | |||||||||||||||||||||||    
T  16719041 gtggattctagggtgacggatcaattaagtccctcaccggtggaccat 16718994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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