View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_low_40 (Length: 396)
Name: NF19380_low_40
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 4639527 - 4639162
Alignment:
| Q |
19 |
acaactgggaccagtttctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4639527 |
acaactgggaccagtttctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaata |
4639428 |
T |
|
| Q |
119 |
ttaactcctcagaaatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4639427 |
ttaactcctcagaaatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagcta |
4639328 |
T |
|
| Q |
219 |
aatccaatgtctgtattttatttatttaagaatgatgttggtgttgattgaatatgtatttgcatgtctctctcatcaacacaacaatattcttaaacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4639327 |
aatccaatgtctgtattttatttatttaagaatgatgttggtgttgattgaatatgtatttgcatgtctctctcatcaacacaacaatattcttaaacaa |
4639228 |
T |
|
| Q |
319 |
agatgacaagtctttttctatattaaaaaatgtaacatatttgatctttgtattttgttttatttt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4639227 |
agatgacaagtctttttctatattaaaaaatgtaacatatttgatctttgtattttgttttatttt |
4639162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 48511739 - 48511978
Alignment:
| Q |
35 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaac---caccaacgtaatattaactcctcaga |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
48511739 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaaccaccaacttaatattaactcctcaga |
48511838 |
T |
|
| Q |
132 |
aatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctg |
231 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48511839 |
aatctattatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacaactaaatccaatgtctg |
48511938 |
T |
|
| Q |
232 |
tat---tttatttatttaagaatgatgttggtgttgattg |
268 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
48511939 |
tgtttatttatttatttaagaatgatgttggtgttgattg |
48511978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 360
Target Start/End: Original strand, 48512178 - 48512273
Alignment:
| Q |
267 |
tgaatatgtatttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtctttttctatatt--aaaaaatgtaacatattt |
360 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
48512178 |
tgaatatgtgtttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtccttttctatattaaaaaaaatgtaacatattt |
48512273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University