View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19380_low_44 (Length: 379)
Name: NF19380_low_44
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_44 |
 | |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 48066637 - 48067006
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066637 |
tggacattctcgttcacaacgtcccatgcaattaattgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcag |
48066736 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066737 |
gagatagggacttcacccattggggctgaaatctttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
48066836 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066837 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaac |
48066936 |
T |
|
| Q |
301 |
catttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttg |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066937 |
catttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttg |
48067006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 48099582 - 48099951
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
48099582 |
tggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcag |
48099681 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| ||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
48099682 |
gagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcat |
48099781 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaac |
300 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
48099782 |
ggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaac |
48099881 |
T |
|
| Q |
301 |
catttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttg |
370 |
Q |
| |
|
||| |||||||||||| |||||| ||||||| || ||||||||||||||| | |||||||| |||||||| |
|
|
| T |
48099882 |
catctctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttg |
48099951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 48062548 - 48062897
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
48062548 |
tggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttgagaccacggatttcattctttttgcagctgcttctcgtaattcatcag |
48062647 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
|
|||| |||||| |||||| || ||| ||||||| || |||||||||| ||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
48062648 |
gagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcat |
48062747 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaac |
300 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48062748 |
ggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaac |
48062847 |
T |
|
| Q |
301 |
catttctggtactcaatgtttgtgaggatgtgatagttcatcccacatcc |
350 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
48062848 |
catttctggtagtcactgtttgtgaggatatgacggttcatcgcacatcc |
48062897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 48106183 - 48106552
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||||| ||| |||| ||| ||||||||||| ||||||||| || |||| || ||||| || | |
|
|
| T |
48106183 |
tggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcatcgg |
48106282 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
|
| |||| |||| ||||||| || ||| || ||||||||| ||| |||||| |||||||||||||||||| ||||| ||||| ||||||| | ||| |
|
|
| T |
48106283 |
gcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacat |
48106382 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaac |
300 |
Q |
| |
|
||||| | ||||| |||||||| |||||| ||||| | |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
48106383 |
tgcatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaac |
48106482 |
T |
|
| Q |
301 |
catttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttg |
370 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48106483 |
cattcctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttg |
48106552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 955 - 849
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcag |
856 |
T |
|
| Q |
101 |
gagatag |
107 |
Q |
| |
|
||||||| |
|
|
| T |
855 |
gagatag |
849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50231277 - 50231389
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50231277 |
tggacattctcgtttacaacgtcccatgcaatcaattgtccactatatcttgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcag |
50231376 |
T |
|
| Q |
101 |
gagatagggactt |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50231377 |
gagatagggactt |
50231389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University